| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_5031 |
|---|
| Symbol | |
|---|
| ID | 6289877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010683 |
|---|
| Strand | - |
|---|
| Start bp | 75214 |
|---|
| End bp | 76899 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642627425 |
|---|
| Product | PilN |
|---|
| Protein accession | YP_001901391 |
|---|
| Protein GI | 187930905 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02520] type IVB pilus formation outer membrane protein, R64 PilN family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACT GGAATCCTCA AATCAAGCCC CTGGTGATAG CACTGATCGC CGTAACTGCT
CTGCAGGGTT GCGGCATTAC GCAGGTACGT GAGAACCAAG CGGCAATCGT TTCGGACGCA
CAGGCCAAGC TTGACGGGGC ACCTCGTAGC CGCCCGGTAG TCCGGATTCA CGATGGATCT
TGGCTGATGG GCGAGAAGAT TCGCGCAAGC AAACCGCAGC CGGAGATTTT CAGCAAGCAG
GTGGTGTTCA AGGGGTCGCT CGCTAGTCTC ACTGAAGCGG CGGATTGGAT CGCCCAGAAC
GTTGGCGTAC GTGCCACCGT CGAAGCTTCG GCCGCCACTA TCCCGCTCCA GATGGCCCGG
TCCGGCTCCG GGAACCCGCC CCAACGCATG TCGGATTTGA ACGGCCCCCT GCCATCGAGC
TACGGCACTG GTGCGGCGCC ACTCTCACCG ACCGGCGCCG CAATCTCTGC TGGCACGACG
GCGAGCGCGT CGGTCGCGCC ACTGGTGTTG AGCTATACCG GCAACCTGCG CGGTTTCCTT
GAAACGATTG ACGCACACTG GGGCGTTTGG GATCGCTACC GCGACGGCAC CGTTGCATTT
TTCAAGACTG AAACGCGCAC CTTTCCGTTG CCAGACCTGG GCGAAGTCGC CTCAATGAAC
GGCTCGATTT CGGCTAACTC AACTGGGGCG GCTGGCTCGG GATCGTCCGG CACGAGCACG
GCATCGACGG GCACCGGTTC ATCGAGCGGT TCCGGCAACG GCGGCCAGAC AGCGACGCTC
GCTGTGGTAT CCGATCCGTG GCTGAATCTG GAGAAGATCG CCAAGACAAT CGCCGGTGCA
GATGCAACAG TGGTGGCCGA CAAGCATCTC GGTTCGGTAA CGGTCACAGC CACGCCGCCG
CAATGTGATC GCCTTGAAGA ATGGGTCAAG GGTCTGGACG CCATGTTCGG CAAACAGATC
GGCATTGACG TGAAGATCTA TGAAGTCCGG TTGTCGCAAG AAGACAACTA CGGTTTGAAT
CTGTCGCTTG CTTACAAGTC CGGCAACGGC CATACCGGCG CGACATTCAC TGGAGCTGGC
GTTCCAAGCG TAACGAGCAC GGCATCGCCA ATGACCTTTG GCGCCACCAT CGTCGGCGGC
AAGTTGGACG GCACCAAGGC CGCGCTCCAA GCGCTGTCCA CCTTGGGTAA TGTCTCGCGG
GTTCTGCAAC GCGGTGGCGT CACACAAAAC GGCAAGGTGC TTGCGCTGCA GGACGCGACG
CTGCAGGACT TCGTGCAAGG CACGCAAACA ACGCTAGCCA GCAACGTTGG CTCTACGACG
GCTATTCAAA CCTCTACCAA CATCTCCGGC TTCACTGGCA ATTTCCGGCC CAAGGTCATC
AATGGCCGAA TCATGATGGT CTTCGATATG ACCATCTCGG AGCTTCAACC GCTGCAAACC
TTTACTTCGG GCAGCAGTGC GAGCCAGTCG ACCGTCCAAC TGCGAACGAT GCCTCTGGCG
CGCTTCGAGC AGTCGGTGGG GCTCAGGCCT GGCGAAACGC TGGTACTCAC TGGCATGCGC
GAGCAATCCA CAAGCACAAC CAACAACGGT ATCGGCTCGC CGTACATGCC GCTGCTGGGC
GGTGGCGTCG ATGCGCAGAA GAAGGACACG ATGATCGCTG TCGTCATCAC TGCGCGCCTG
CTCTAA
|
|---|
| Protein sequence | MKNWNPQIKP LVIALIAVTA LQGCGITQVR ENQAAIVSDA QAKLDGAPRS RPVVRIHDGS
WLMGEKIRAS KPQPEIFSKQ VVFKGSLASL TEAADWIAQN VGVRATVEAS AATIPLQMAR
SGSGNPPQRM SDLNGPLPSS YGTGAAPLSP TGAAISAGTT ASASVAPLVL SYTGNLRGFL
ETIDAHWGVW DRYRDGTVAF FKTETRTFPL PDLGEVASMN GSISANSTGA AGSGSSGTST
ASTGTGSSSG SGNGGQTATL AVVSDPWLNL EKIAKTIAGA DATVVADKHL GSVTVTATPP
QCDRLEEWVK GLDAMFGKQI GIDVKIYEVR LSQEDNYGLN LSLAYKSGNG HTGATFTGAG
VPSVTSTASP MTFGATIVGG KLDGTKAALQ ALSTLGNVSR VLQRGGVTQN GKVLALQDAT
LQDFVQGTQT TLASNVGSTT AIQTSTNISG FTGNFRPKVI NGRIMMVFDM TISELQPLQT
FTSGSSASQS TVQLRTMPLA RFEQSVGLRP GETLVLTGMR EQSTSTTNNG IGSPYMPLLG
GGVDAQKKDT MIAVVITARL L
|
|---|
| |