Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_5027 |
Symbol | |
ID | 6289873 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010683 |
Strand | - |
Start bp | 70505 |
End bp | 71545 |
Gene Length | 1041 bp |
Protein Length | 346 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642627421 |
Product | type II secretion system protein |
Protein accession | YP_001901387 |
Protein GI | 187930901 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1459] Type II secretory pathway, component PulF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 51 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGGCC TGTCGTGGAC GCTGCGCCGG CGCCTGTATC AACAGGCTTC GTCGCAACTA GATAACGGGA TGACGCTTTC GCAGGTGCTT GGGGAGTTCA GCACGCGCTT AGCGCGCCGT GGGCGTAAGC GTGCCGCAGA GGCCGCCGAT GAGGTTGCGC GACGGGTGGT GGACGGCGAT CCCTTCGTTC TAGCTTTGGG CGACGACCTT TCGGACTTGG AGCGCAGCGT GCTCGACGCC GGCGACCAAG CCGGCCAGTT GCCGGATTCC ATGCGCCTGG TGATGGAAGT GCGTGATCTC ACCACGCGCC TACGTCAGAA ACTGCAGGCG AGTTTCTTCG CGCCCTCCGT CTACCTGGTT AGCTTGTACG CGGTGCTGTT GTTGATTGGT GCCTCGATCG TGCCGCAGTT CCTGGACGTG CTGCCGCTCT CCAAGTGGAC CGACTGGGCC TATGCGATGT ATCTGATGGG GGATCTCGCC GTCGGCTGGC CGGCACCGAT TTGCTTCGGC GGGCTGCTGA TCTATGCCGT CTGGTCATGG TGGGCGCTGC CGCGCTGGAT TGGACCCGCG CGCGCGTTCT GCGACCGGCG CTTGTTCCCC TTCACGGTCT ATCGGGAAAT CACTGGCTTC ACCTGGTTAC TGTCGTTCGT CGCGCTCTTG CGCGCCGGCA TCCCGGACAC GGTGGCGCTG GACAACCAGA TTGCGTCCGC TTCGCCGTGG CTTGCCTCGC GTCTGAAACC TATCCGCAAT GGGCTGATTG ATGGTCTGAG CCTACCGGAA GCCATGCGGG CTACCGGGTA CGGCTTTCCA TCCCCGGACT TGATCGATGA GATCGGCGCC TACGCCGGCT TTGACGACTT CACTGACAAG ATCGCCGTGG CCGTGCGCCA GTACGCGGAA GTCATCGAGC GGCAACTGCT CGCGCGGGGC ATGTTGATGT CGGCGGTCTT CACGGGGTTC ATGTTTCTCG CTTTCGTGGT GCTGCAGCTT GGCGCCAACT CGCTTTCATC GATTCTCACG TCCGCGATGG GGCAAATCTG A
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Protein sequence | MSGLSWTLRR RLYQQASSQL DNGMTLSQVL GEFSTRLARR GRKRAAEAAD EVARRVVDGD PFVLALGDDL SDLERSVLDA GDQAGQLPDS MRLVMEVRDL TTRLRQKLQA SFFAPSVYLV SLYAVLLLIG ASIVPQFLDV LPLSKWTDWA YAMYLMGDLA VGWPAPICFG GLLIYAVWSW WALPRWIGPA RAFCDRRLFP FTVYREITGF TWLLSFVALL RAGIPDTVAL DNQIASASPW LASRLKPIRN GLIDGLSLPE AMRATGYGFP SPDLIDEIGA YAGFDDFTDK IAVAVRQYAE VIERQLLARG MLMSAVFTGF MFLAFVVLQL GANSLSSILT SAMGQI
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