Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_5016 |
Symbol | |
ID | 6289952 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010683 |
Strand | - |
Start bp | 63241 |
End bp | 64272 |
Gene Length | 1032 bp |
Protein Length | 343 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642627410 |
Product | type II secretion system protein E |
Protein accession | YP_001901376 |
Protein GI | 187930890 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 0.0975061 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGACC AGCAGACACG TGGTTTCGCG TTCGAGGTCC TCCATGACTA CCTGCGTGAT CTGCAGGAAA TGATGGCAGA CCCGGAAACC AACGAAATCA TGATCAACCG CCACGATGTC GTGTACCGCG AGCGGCGCGG TGTGATGGAG CGCATCGAAG GGCTGGCGAT CGCGCCTGCC GCGCTCGATA CCGCCATCAC GGTTCTGACC AATATCAACG ACAAGGATCA GGCGCCGCTG CTCGATGCGC GCCTGCCAGG CCTGCGCATC GCAGCCGCCC GATTCCCCGT GTCAATCCAC GGCGACATGA TGTCGATCCG CAAGCACTCC GTGCGGCGCA TCGCCTTGGA TGATTACGTG CGCAACGGTG CTTTCGCCGT GTTGCCCGCC TCGCAGAACC GCTTCATCGG CCGGCAGGAT CGGACTGTTC TCGACCACGC CGCTGAAGGC GGCGAGGCGT TGATGCGCTG CCTGCAATGG ATCATGCGCC AGCGCTACAA CATTGTGTTC TCCGGCGGCA CCTCATCCGG CAAGACCACC CTGCTCAATG CGTTGCTCGA AGCGATTCCG GAATCCGATC GCATTGTCAC CATCGAGGAC ACCGCCGAAC TGAAGATCGC TTTGCCCAAC TTCGTGTCGT TCGAAGCGAA CCAGAACATC ACGATTCGCA ATCTCATTAA GTTCGCACTG CGCATTCGGC CCGACCGCAT CTTTGTGGGC GAGGTCCGGG GCGCCGAGGC CTTCGACCTG GTGGAAGCAC TGAACACCGG GCATGACGGC TCGATTTGCA CACTGCACGC CACGAGCGCG GATGAAGCGC CCTACAAGTT GGAGTCGTAC ATCCGCATGA GCGAGGAAGG CCGCCTGATC GCCACCGAGG ATCTGCGCAA AAAGATCGCC TCGACCTTCC GCTTCTTCTT GCATGCCGAT CGACAAGGTG ATGGCACGCG CGGGCCTGTT GAGCTCCGCG AAGTGCTGGG CGTTGAGGAC GGCCGCTACA AGACACGCCT TTTGTTTTCC CGTTTCGCCT AA
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Protein sequence | MNDQQTRGFA FEVLHDYLRD LQEMMADPET NEIMINRHDV VYRERRGVME RIEGLAIAPA ALDTAITVLT NINDKDQAPL LDARLPGLRI AAARFPVSIH GDMMSIRKHS VRRIALDDYV RNGAFAVLPA SQNRFIGRQD RTVLDHAAEG GEALMRCLQW IMRQRYNIVF SGGTSSGKTT LLNALLEAIP ESDRIVTIED TAELKIALPN FVSFEANQNI TIRNLIKFAL RIRPDRIFVG EVRGAEAFDL VEALNTGHDG SICTLHATSA DEAPYKLESY IRMSEEGRLI ATEDLRKKIA STFRFFLHAD RQGDGTRGPV ELREVLGVED GRYKTRLLFS RFA
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