Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_5009 |
Symbol | |
ID | 6289894 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010683 |
Strand | - |
Start bp | 56752 |
End bp | 57480 |
Gene Length | 729 bp |
Protein Length | 242 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642627403 |
Product | hypothetical protein |
Protein accession | YP_001901369 |
Protein GI | 187930883 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3736] Type IV secretory pathway, component VirB8 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 43 |
Plasmid unclonability p-value | 0.289444 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATTTT CCTCCTCCAG ATCCACCCCT GAAATGCAAA TTACTCCGCC GCCCGGAACT GGCCAGGGCG TCCGTGGATG GTTTGCTGCG TTTCAGAAAC CAATTCTCGA CAAGCACCTG GCAACGAAAG TCGCCATTGT GTTCGCGGCT ATCTCCATCG GGCAGACCGT CGCGATCGTC CGAATTAGCG ATAACTCTGG CCCGAAGCCC TATTTCGTCG AACGCGACAA GCAAAGCGGT GCCGTCTACT ACAGCGAGAA ATACGCCGAG GCGTTCACCC CGACCGCCGA CAACAACGCC TATTTCCTGC GCAAGTGGGC TACCCGCGTA TTCACGATCA ACCTGGATGC GCAAGACACC CTGAAGCGAC AGATCCCGCT TGCACGCACG TGGACCTCCG GTGCCGCAAC CAAGGAGCTC GACACCTACA TCACTGAAAC CGATCCGGTG GCCCAGCGCG TCGTCAACAC GCCCGGGCTG ACCCGTCAGT TCGAAGACAA CTCCATATCG TTCTCGGCCG ACGGCAACAT CGCCTACATG ATCGTCACTC TGACCGAGAG CATTGCCGGC GTTCGCCAGA CGCCCAAGCA GAAGCTGCTC ACCATCAACT TCCTCACCGC GCCGCAACAA CTCAAGCCGG AAGACAGGAA GGACAACCCG ATCGGCATGC GCATCACGGG CCTGTCCATT ACTCCGTACA CCGGCATTAC CCCAGGATCG ACGAAATGA
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Protein sequence | MKFSSSRSTP EMQITPPPGT GQGVRGWFAA FQKPILDKHL ATKVAIVFAA ISIGQTVAIV RISDNSGPKP YFVERDKQSG AVYYSEKYAE AFTPTADNNA YFLRKWATRV FTINLDAQDT LKRQIPLART WTSGAATKEL DTYITETDPV AQRVVNTPGL TRQFEDNSIS FSADGNIAYM IVTLTESIAG VRQTPKQKLL TINFLTAPQQ LKPEDRKDNP IGMRITGLSI TPYTGITPGS TK
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