| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4952 |
|---|
| Symbol | |
|---|
| ID | 6289921 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010683 |
|---|
| Strand | + |
|---|
| Start bp | 1344 |
|---|
| End bp | 3077 |
|---|
| Gene Length | 1734 bp |
|---|
| Protein Length | 577 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642627347 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001901313 |
|---|
| Protein GI | 187930827 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 49 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACT CAAATCAAGC CATCGATGTA ACCCGTGCCC AGTACGCCGC CATGCGCGCC
TGGCTGCAGG GCGTGGCGGC GGTCGACGTG GCCGACCGTT GGCTGTCGTC CGATCCCGAC
ATCGAGTGGA CAGAAAGCCT GGCCCTGCGT GCGCTACGCG CGATTCGCGC CACGCTCGCG
CAACTGGCGC TGCGTCATGA ACAGGAAGCG CTGGCCAGCC TGTTGGCCAC CGGGCCGCGC
TCAACCACGG CGTTGAACCA GGTGCTCGCA GGCCTGCGGC GCCTGGAAGA ATTGGGTACG
CCGGCACCGG CGACCAAGCA CGACGTGCGT TTGTGGTTTG CTGCACCACT GGCACGCCGG
CTGCAGGCCG CCGGCGTGGC CACGCTGGGC GAACTGATGA CGCTGGCCAA CGATCTGGGC
CGAGCCTGGT GGCGCCGTGT GCCACGCATC GGCCCGGCCG CTGCGGCGAC CATTGTGCGC
ACCCTGGCTG CAGCTGAAGC GACACTAGGG CGCCTGGGCG CCCACGTCAC TGGCGTATCG
TTGCCTGCCG CGCTCCCCTC GCCCGAGCTC GTGCCGCACG CCGGCCGCGC GGTGCCGCTG
GAAGCGATCC GCCTGCCGGC GGCCCTCGAT GGCCGCGCCG GCATCAACCG GGGCGACACC
AACCGCTGCC GCATCGACGC ACTCAACGAC TACCAGGCAA TCCAGACCTG GTTGTCGCTG
TGGCCAGCCG GTGGTCACAC CTGGCGCGCG TATCGCAAGG AAGCGGAACG CTGCTTGGCC
TGGGCCATCC TGGAGCGCGG CAAGGCTTTC AGCGATCTGC TGACCGATGA TTGCCTGGCG
TACCGGGCTT TCCTGGCACA GAAGGATTTC GGGCCACGCT GGAGCGGGCC GCAGGTCGCA
CGCACACTGC CGGGCTGGCG GCCGTTCCAA GGGCCGCTGT CGACGCGCAG CCGCGCCTAT
GCTGAGCAGG TCCTGGCGGC CCTATGCGAG TGGCTGGTTG GCCGCCGCTA TCTGGACTCG
AACCCATGGG ACGGCATGCC AGCGCTGCGT GTGGCTGCAC TCGATATCGA CATCGAGCGC
GCGGTGCCGC CGGCGGTCTG GCAAGCGCTG CAGCCATGGC TAGACGCGCA GGCCGCCGAT
GACGTGCGCT GGCGTACCAT CCGCGCCGCC GTGTTGCTGT TGCACGATTC CGGTATGCGT
GTATTCGAGG CCGCCGGCGC CGAACGATCG GGCCTGCGGC CCGCCGGCGG CGATGGCCCG
CTGTGGGGTG AGCTACGCAT CGTCGGCAAG CGAACCAAGA CGCGGATGGT GCCAATCAGC
CGCCGCGCAC ATGACGCACT GGTGGCGCAC TGGCGAGATC TGGGGGACGA ACACGCTGCA
GAGGGCCCGC TGCTGGCACC TGCCGAGCCC TGCACCAGCC CGCGTGCGCT GGCCAAGGCC
GCCGACGGCC GCCGTGGCTA CAGCGACCGA GGGCTGCGCC ACCTGGTTAC TCGCGCCGCG
GAGGCTTTCC GTGCGCACCT GGAGCAAGCC GACCCAGATC TACGCGCCCA GGCAATCCAT
CTGCATCCCC ATGCGTTCCG GCACGCTTTC GGCACTGCGG GCGCCGAGGC CGGGGTGCCG
CTCGATGTGA GGCAAAGCTA CCTGGGGCAC GCCTCGCCCG CGACTTCGGC GATCTACGAC
AAGGCCGGTG CCCGCCGGCG CCAACGCGAA GTCGCCAAGC TGTTCAGCGT CTAG
|
|---|
| Protein sequence | MKNSNQAIDV TRAQYAAMRA WLQGVAAVDV ADRWLSSDPD IEWTESLALR ALRAIRATLA
QLALRHEQEA LASLLATGPR STTALNQVLA GLRRLEELGT PAPATKHDVR LWFAAPLARR
LQAAGVATLG ELMTLANDLG RAWWRRVPRI GPAAAATIVR TLAAAEATLG RLGAHVTGVS
LPAALPSPEL VPHAGRAVPL EAIRLPAALD GRAGINRGDT NRCRIDALND YQAIQTWLSL
WPAGGHTWRA YRKEAERCLA WAILERGKAF SDLLTDDCLA YRAFLAQKDF GPRWSGPQVA
RTLPGWRPFQ GPLSTRSRAY AEQVLAALCE WLVGRRYLDS NPWDGMPALR VAALDIDIER
AVPPAVWQAL QPWLDAQAAD DVRWRTIRAA VLLLHDSGMR VFEAAGAERS GLRPAGGDGP
LWGELRIVGK RTKTRMVPIS RRAHDALVAH WRDLGDEHAA EGPLLAPAEP CTSPRALAKA
ADGRRGYSDR GLRHLVTRAA EAFRAHLEQA DPDLRAQAIH LHPHAFRHAF GTAGAEAGVP
LDVRQSYLGH ASPATSAIYD KAGARRRQRE VAKLFSV
|
|---|
| |