| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3748 |
|---|
| Symbol | |
|---|
| ID | 6287631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 3932615 |
|---|
| End bp | 3933706 |
|---|
| Gene Length | 1092 bp |
|---|
| Protein Length | 363 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642627332 |
|---|
| Product | DNA topoisomerase |
|---|
| Protein accession | YP_001901298 |
|---|
| Protein GI | 187930811 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3569] Topoisomerase IB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAACGCG TTCCCAAGTC TGCGCCCGCG CCGGTTGCCG CAAGCACCAC CACCCTCGCC
GAAGCGCTGC CCGAACGGCT GCGCTATGTG GACGACACAC GCCCGGGCTA CACCCGGCGT
CGGCTGCGCG GCCGCTTCGT CTATTTCGAC ACGCGCGGCG GGCGCATCCG CGACCCGGCG
GTGATTGCGC GCATCAACAA GCTGGCGATC CCGCCGGCCT ATACCGACGT CTGGATCTGC
CCACACGCGG GCGGTCATCT GCAGGCGACG GGGCGCGACG CGCGTGGGCG CAAGCAATAT
CGCTATCACG CCGACTGGCG CGCCTTTCGC GATGCCGACA AGTACGGGCG GCTGCTGGCC
TTCGGGGCAG TGCTGCCGTG GGTGCGCGGG GCGATCACCG CCCATTTGGA GGCGCCGGGC
CTGTCGCGCG AAAAGATGCT GGCGACGGTG GTCTACCTGC TGGACGTGAC GCTGGTGCGC
GTGGGCAACG CGGCGTATGC GCGCGACAAC CGGTCCTACG GGCTCACGAC GTTGCGCAAT
CGGCACGTCG AGGTCCACGG CAACACGGTG CGCTTTCAGT TTCGCGGCAA GAGCGGTGTG
GAGCACGACG TGTCGGTATC GGACCCGCGC CTGGCGCGCA TCATCCGGCG CTGCGTCGAT
CTGCCGGGGC AGGAATTGTT CCAGTACATC GACGAAGCTG GCGAGCGCCG TGCGGTCGAT
TCCACAGATG TGAATGCCTA CTTACAGGAG ATTTCCGGCG CGGATTTCAC GGCGAAGGAC
TACCGCACCT GGGCCGGCAG CGTGCTGGCG CTGGATCTGC TGCGCGGGCG CACGCCGACG
AACGTTACCG AGGCGCGCCG GCAGGTGGTG GAGGTTGTTG CTGCCGTGGC CCAGCGCCTC
GGGAACACAC CGGCCGTCTG CCGCAAGTGC TATGTGCACC CGGCCGTGGT GGACGCGTTC
CTGGAGGGCG AACTGGAAGC ATTGCCCCCG ACCCGCGCGC GCAAGGGCCT ACGACGCGAA
GAGGTGGCGC TGCTTCGATT TCTCGAGCAC GCCGCCGGCG CAAAGGGCAC AGGCGAAAAA
AAGCCCGCCT GA
|
|---|
| Protein sequence | MERVPKSAPA PVAASTTTLA EALPERLRYV DDTRPGYTRR RLRGRFVYFD TRGGRIRDPA
VIARINKLAI PPAYTDVWIC PHAGGHLQAT GRDARGRKQY RYHADWRAFR DADKYGRLLA
FGAVLPWVRG AITAHLEAPG LSREKMLATV VYLLDVTLVR VGNAAYARDN RSYGLTTLRN
RHVEVHGNTV RFQFRGKSGV EHDVSVSDPR LARIIRRCVD LPGQELFQYI DEAGERRAVD
STDVNAYLQE ISGADFTAKD YRTWAGSVLA LDLLRGRTPT NVTEARRQVV EVVAAVAQRL
GNTPAVCRKC YVHPAVVDAF LEGELEALPP TRARKGLRRE EVALLRFLEH AAGAKGTGEK
KPA
|
|---|
| |