| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3662 |
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| Symbol | |
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| ID | 6286287 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 3833625 |
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| End bp | 3835577 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642627245 |
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| Product | Lytic transglycosylase catalytic |
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| Protein accession | YP_001901212 |
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| Protein GI | 187930725 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.874549 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATTGA AGGCCAAGGC AGTATATCGC GCGGTCGCGC TGGCTTTTGC GGGCGTGGTG
GGCATGAGTG TGGTCGGCCC GACGCCGCTG GCGGTGGCCG CAAAGCGCCA GGCGCCGCAG
GGCATTCCAG CCAATCCGGA TGACGCGTTT GTCGAGCTGC GCAACGCGGC GCGCCGCAAC
GATGTGTCGC GCAGCTGGGA GCTGGCCGAC AGCCTCTCCG ATTACCCGAT CCAGTCCTAC
GTGCAGTACT TCCGCATCAA GCCGCAGCTG TACGATGCCA GCGGCTATGC GCGTACCGAT
GCCCCGGAAG ATGAGATCCG CTCGTTCCTG CAGCGCTACA AGGGCGAGGC GATCGCCGAC
CGGCTGCGCA ACGACTGGCT GCTTGTGCTC GGCAAGAAGC GCGATTGGGC CACCTTCGAT
GCCGAGTACC CCAACTTTGT GCTGAAGGAC GACGCGCAGG TCGAGTGCTA TGCCCTGCTC
TCGCGCGCGA TGAAGGGCCA GAACGTGGCA GCCGATGCAC GGAACACGCT GTCGGATCCC
AAGGGCTATG GCGAAGGGTG TGTCGACCTG ATCGGCTATC TGGCGCAGTC CAAGCAGTTC
ACCCGTGCGG ATGTGGCCTT TGCGGCGCGG CTGTCGCTGG AGCAGAACCT CGTCACGCAG
GCGTCGCGCA TTGCCGCGCT GCTGCCCGAC GGCGATCGCG TGGACAACGA TACGCTGGCC
AACGTGACAC GCATGGCGCG CAACGATCCG TCGCAGGCGA CGGCGTATCT GTTGGCGCAA
ACCGGCAGCC TGTCGCGCGA AGAGCAAGGC GCGGGCTGGG GCGTCATCGG CCAGTACGCC
GCCAAGAAGC AGACGCCGGA TGCGCTGGAC GCCTACCGTC GCCAGCTGAC GCTCGGCGGC
GATGCCTACC TCTCCGACGA GTCGCAGGAG TGGCGCGTGC GCGCGGCCCT GCGCGCGGGG
GATTGGAAGA TGGTGCGTCA GGCCGTTGAA AAAATGCGTC CCAGCCTGCG CGATCGAGAC
CCCGCCTGGA CGTACTGGTA TGGCCGTGCG CTCAAGGCCG ACAATCGCAA CGATGAAGCT
CGCCAGCAGT TCCAGTCGAT TGCCGGCCAG TTCAACTTCT ATGGCCAGTT GGCGCAGGAA
GAACTCGGTC AGCGCATCAC CGTGCCGCCC CGCACGACCG TGGCCGACGC CGAGATCGAC
GTGATGGGCC GCAACCACCC GGGCTTTGGG CGTGCCAAGA AGCTGTACGA CCTGAATCTG
CGCTTCGAAG GCAACCGCGA GTGGAACTGG GAGCTGCGCA ACATGAGCGA CCGCGAGTTG
CTGGCCGCAG CCGAATATGG CCGCAAGCTC GGCCTGCTCG ATCGCACCGT CAATTCGGCG
GACAAGACCA AGACTGAGCA CGATTTCTCG CTGCGCTTCC CGACGCCGTA CCTCAATGTG
GTCCAGCGCA ACGCCGATGC GGTGGGGTTG GACATTGCCT GGGCCTACGG CCTGATCCGC
CAGGAATCCC GCTTCATCAT GGACGCACGT TCGTCGGTGG GTGCCTCGGG CCTGATGCAG
GTGATGCCGG AAACCGCCAA GCACATTGCC AAGAAGATTG GCCTGCCGGG GTTCCGCGTT
TCGCAGATGA GCGACATCGA TACCAACGTG CTGCTGGGTA CGGCCTACCT GTCGATGATC
CTGACCAACC TGGACAGTTC GGTCACGCTG GCGACTGCCG GCTACAACGC GGGCCCAGGC
CGCCCGAAAC GCTGGCGCTC GACGCTCGCG CGCCCGGTGG AAGGCGCGAT CTTCGCCGAG
ACGATTCCGT TCAACGAGAC GCGCACGTAT GTGAAAAACG TGCTGTCGAA CGCGACGTAC
TACAGCGCAT TGCTGACCGG TCGCCCGCAG TCCTTGAAGG ACCGCCTGGG CAAGGTGGTG
CCGGAATCCG TGACGCCGGA CGATCTGCCG TAA
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| Protein sequence | MTLKAKAVYR AVALAFAGVV GMSVVGPTPL AVAAKRQAPQ GIPANPDDAF VELRNAARRN
DVSRSWELAD SLSDYPIQSY VQYFRIKPQL YDASGYARTD APEDEIRSFL QRYKGEAIAD
RLRNDWLLVL GKKRDWATFD AEYPNFVLKD DAQVECYALL SRAMKGQNVA ADARNTLSDP
KGYGEGCVDL IGYLAQSKQF TRADVAFAAR LSLEQNLVTQ ASRIAALLPD GDRVDNDTLA
NVTRMARNDP SQATAYLLAQ TGSLSREEQG AGWGVIGQYA AKKQTPDALD AYRRQLTLGG
DAYLSDESQE WRVRAALRAG DWKMVRQAVE KMRPSLRDRD PAWTYWYGRA LKADNRNDEA
RQQFQSIAGQ FNFYGQLAQE ELGQRITVPP RTTVADAEID VMGRNHPGFG RAKKLYDLNL
RFEGNREWNW ELRNMSDREL LAAAEYGRKL GLLDRTVNSA DKTKTEHDFS LRFPTPYLNV
VQRNADAVGL DIAWAYGLIR QESRFIMDAR SSVGASGLMQ VMPETAKHIA KKIGLPGFRV
SQMSDIDTNV LLGTAYLSMI LTNLDSSVTL ATAGYNAGPG RPKRWRSTLA RPVEGAIFAE
TIPFNETRTY VKNVLSNATY YSALLTGRPQ SLKDRLGKVV PESVTPDDLP
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