| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3643 |
|---|
| Symbol | |
|---|
| ID | 6289507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 3814565 |
|---|
| End bp | 3815710 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642627227 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_001901194 |
|---|
| Protein GI | 187930707 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | [TIGR02352] glycine oxidase ThiO |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAACCT CAACTTCATT CGACGTAACG ATCCTCGGTG GCGGCCTCGC CGGCCGCCTG
TGTGCCTGGC AACTCGCGCA GACGGGGGTG CCCCCCGCGC GCATTGCCTT GGTGGAGCGC
GGTCCGCGTG ACGGCAGCGG TGCCGCGGCG TACGTTGCCG CGGCCATGCT GGCGCCGCTT
GCCGAAGCCG CCGTGGCCGA TCGTTTTGTC GTGGACTTGG GGTTGGCAAG CCTGGCGCTG
TGGCGCGATT GGTTGCCCAA GCTGCGCACG CCGGTCTTCT TCCAGGAGGC CGGCACGCTG
GTGGTGTGGC ATGCGGCGGA CCGTGGTGAG GCGTCGTTGT TTGCCAACCA CGTGCGCAAT
GCCGCGCCGC CCGAGCGCGT GGCCGCCGAT CTGCGTGCCG TGGACGCGTC CGGCATTGCC
CAACTCGAGC CGCTGCTCGC ACAACGCTTC ACGCAGGGGC TGTATCTGGC AGGCGAAGGT
CAGCTTGACC CGCGCGGCGT GCTGGATGCG CTGGCGACCG AGCTGGAAGC GCTCGGCGTG
CAACTGCGCT GGAATACCGA GGTTGTCGAT CCGAGCCCCG ACGCACTGGC TGCCGCCGGG
CTGGGTGCGC GCCTGGTGCT CGATTGCCGG GGCCTCGGTG CCAAGCCGCA GTGGCCGCGA
CTGCGTGGCC TGCGCGGCGA AGTGGCGCGC ATCCATGCGC CGGACGTGTC GCTCACGCGG
CCGGTGCGCA TGCTGCATCC GCGCTACCCG CTCTACATCG CGCCCAAGCC GGGCAATGTC
TACGTGATCG GCGCGACCGA GCTGGAATCC GACGACATGT CGCCAGCAAG CGTGCGCTCC
ACGCTGGAAT TGCTGTCTGC GGCCTACGCC GTGCACCCCG CGTTTGGCGA GGCGCGCGTG
CTGGAGCTGA ACACGCAGTG CCGCCCGACG CTGCCGGACC ACCGTCCGGC CGTCCGCTGG
GATGGCGCTG GCACGTTGTC GGTCAATGGC CTGTACCGGC ACGGCTACAT GATCGCGCCC
GCCGTCACCC AAGCCGCGGT GGCAGCGGCG TGCGACGTGC TGGACGGCTG TGCCTTCGAT
ACGGACGACT GCGAATGGCC CGAGCTATTC GCCGCCGCTG CATCGCCTGA ACCTGTTTTG
TCATGA
|
|---|
| Protein sequence | MPTSTSFDVT ILGGGLAGRL CAWQLAQTGV PPARIALVER GPRDGSGAAA YVAAAMLAPL
AEAAVADRFV VDLGLASLAL WRDWLPKLRT PVFFQEAGTL VVWHAADRGE ASLFANHVRN
AAPPERVAAD LRAVDASGIA QLEPLLAQRF TQGLYLAGEG QLDPRGVLDA LATELEALGV
QLRWNTEVVD PSPDALAAAG LGARLVLDCR GLGAKPQWPR LRGLRGEVAR IHAPDVSLTR
PVRMLHPRYP LYIAPKPGNV YVIGATELES DDMSPASVRS TLELLSAAYA VHPAFGEARV
LELNTQCRPT LPDHRPAVRW DGAGTLSVNG LYRHGYMIAP AVTQAAVAAA CDVLDGCAFD
TDDCEWPELF AAAASPEPVL S
|
|---|
| |