Gene Rpic_3541 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3541 
Symbol 
ID6286425 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3710092 
End bp3710961 
Gene Length870 bp 
Protein Length289 aa 
Translation table11 
GC content65% 
IMG OID642627125 
Productalpha/beta hydrolase fold 
Protein accessionYP_001901092 
Protein GI187930605 
COG category[I] Lipid transport and metabolism 
COG ID[COG2267] Lysophospholipase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.421179 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCAAG CCCCCGCTCA GGTCACTGCC CATCCAGCGC TGGAAAGCCG CCAGCGCATG 
AAGGACGGCA CTGAACTGCT GGTCCGCACC TGGTTGCCCG CGCCCGACAC CGGCGAGCCG
CGCGGCACCG TCATCCTCGT CCATGGCATG GCCGAACACA GCGGCCGCTA TCCGCATGTG
GCCAAGGTGC TCACCGATCT TGGCCTGCGC GTAAGGGCCT TCGACCTGCG CGGCCACGGC
AAGAGCGGCG GCCCGCGCAT GGCGCTCGAC GCGCAAGACA ACTACCTCAC CGATCTCGCA
GAAATCGTCG ATGCGGCGGT CGCCGAATGG CACGAGATGC CGTTCGTGCT CGGCCACAGC
ATGGGCGGAT TGATCGTCGC GCGCTTCACC ACCGCGCGTA TCCGCCCCGT GCGCGGCGTG
CTGTTGTCAT CGCCCGCACT GCGCGTGAGG TTGCCGCCCG GAACGGGCAT CGTGCGGGGG
ATTCTCTCCG CCATCGCGCC GAGGTTGCCG GTGCCCAATC CCGTCGATCC AGCCAAGCTT
TCGCACGATC CGAGCATCGC CGCCGCCTAT CGGGCAGACA CACTGGTGCA AAGCACGATC
AGCGCATCAT TGCTGGAGTT CATGCTCAAT GCGATCACGC AGGCGCAGCA AGACGCGCCG
CGCCTGGAAG CGCCGATGCT GCTGATGGCC GGCGGCGCGG ATTCGATTGT CGATCCGTCT
GGCAGCCGCG ACTTTTATGC GAATGCGCCG GAGGATTTGC GCTCGTTGGC GTGGTTTGAA
TCGGGGTACC ACGAGATCTT CAACGAAGCC GAACCGCTGC GTAGCGAGGT ATTCGGAAAG
ATGACGGAGT GGTTGGCTTC GCGGATTTGA
 
Protein sequence
MTQAPAQVTA HPALESRQRM KDGTELLVRT WLPAPDTGEP RGTVILVHGM AEHSGRYPHV 
AKVLTDLGLR VRAFDLRGHG KSGGPRMALD AQDNYLTDLA EIVDAAVAEW HEMPFVLGHS
MGGLIVARFT TARIRPVRGV LLSSPALRVR LPPGTGIVRG ILSAIAPRLP VPNPVDPAKL
SHDPSIAAAY RADTLVQSTI SASLLEFMLN AITQAQQDAP RLEAPMLLMA GGADSIVDPS
GSRDFYANAP EDLRSLAWFE SGYHEIFNEA EPLRSEVFGK MTEWLASRI