| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3540 |
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| Symbol | |
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| ID | 6286424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 3708389 |
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| End bp | 3710023 |
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| Gene Length | 1635 bp |
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| Protein Length | 544 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642627124 |
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| Product | glucose-methanol-choline oxidoreductase |
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| Protein accession | YP_001901091 |
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| Protein GI | 187930604 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.200796 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACACCT ACGACTACAT CATCATCGGC GCAGGCTCCG CAGGCTGCGT CCTCGCCAAC
CGCCTGACCC GCGACCCCGA CGTTTCCGTG CTGCTGCTGG AAGCCGGCGG CAAGGACGAT
TACCACTGGA TCCACATCCC CGTCGGCTAT CTGTACTGCA TCGGCAACCC GCGCACCGAC
TGGCTCTATC GCACCCGCGA AGAACCCGGC TTGAACGGCC GCTCGCTCGG CTACCCGCGC
GGCCGCGTGC TGGGTGGGTG CTCGTCGATC AACGGCATGA TCTACATGCG TGGTCAGCGT
GAAGACTACG ACGGCTGGGC CGCCATCACC GGTGATGATT CCTGGAGGTG GGACGCCGTG
CTGCCGCTGT TCAAGGCCAG CGAGAACTAT CACGGCGGCG CGAACGCATG GCACGGCGCA
AACGGCGAAT GGCGCGTCGA GCCGCAACGC CTGCACTGGC AGGTGCTGGA GACCTTCATC
GAGGCGGCCG TGCAGGCGGG CATCCCGCGC ACGAGTGACT TCAACCGCGG CGACAACTTT
GGCGTTGGCT ACTTCGAGGT CAACCAGAAG CGCGGCATCC GCTGGAACAC GGCCAAGGGC
TTTCTGCGCC CGGCCTCGCA GCGTCCGAAC CTGACCATCG TGACGGGTGC GCAAGTCCGG
GCGCTGACGT TTGACGGCAA GCGCTGCACT GGCGTGACGT ATCGCGGGGC CGGGCAGGAC
TACACGGTGG CCGCGCGCGA AGAGGTGATC CTGTCGGCGG GCGCGATCAA CTCGCCGCAA
TTGCTGGAGC TGGCCGGCAT TGGTCAGCCG GAACGTCTGC AGGCGCTCGG CATTCCGGTG
CGCCAGGCGC TGCCGGGTGT CGGAGAAAAC CTGCAGGACC ACCTGCAACT GCGCAGCGTG
GTCAAGGTGA ACGGCGTGCC CACGCTCAAC ACGCGCGCCT CAAACTGGTG GGGCAAGGCG
CTCATCGGCA TGCAATACGC GTTCAACCAG AGCGGGCCGA TGAGCATGGC GCCGTCGCAG
CTGGGCGTGT TCGCGCGCTC GAACCCGCAC GTGTCGCGGC CCGATGTGGA GTACCACGTG
CAGCCGCTCT CGCTCGACAA GTTTGGCGAT CCGCTGCACG CGTTCAATGC GTTTACCGCG
AGCGTGTGCA ATCTGCGGCC GACCTCGCGC GGCACGGTGC ATGTCACGTC CGCCGACCCG
TTTGCCGCGC CGACCATCGC GCCGAACTAC TTGTCCACAG AGGAAGACCG CAAGGTCGCG
GCCGATTCGC TGCGCCTCAC ACGCCGCATC GTCGCGCAGC CAGCCTTGGC GCAATACAGG
CCCGAGGAGT ACCTGCCCGG CGCGGCGTTT CAAACCGACG AGGAACTTGC CCGCGCCGCC
GGCGAGATCG GCACGACCAT CTTCCACCCG GTCGGCACGT GCCGCATGGG GCGCGCCGAT
GATGCAAACG CGGTGGTCGA CGCGCAGCTG CGCGTGCGCG GGATCGAAGG CCTGCGGGTG
GTCGACGCGT CCGTCATGCC GACGATTACG TCGGGCAATA CCAACTCGCC GACGATCATG
ATTGCGGAGA AGGCGAGCGA GATGATCCGT GCCGCGCGCA AGGCCCGAGC CCGCGGTGAG
GCCGTCCCGG CCTGA
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| Protein sequence | MDTYDYIIIG AGSAGCVLAN RLTRDPDVSV LLLEAGGKDD YHWIHIPVGY LYCIGNPRTD
WLYRTREEPG LNGRSLGYPR GRVLGGCSSI NGMIYMRGQR EDYDGWAAIT GDDSWRWDAV
LPLFKASENY HGGANAWHGA NGEWRVEPQR LHWQVLETFI EAAVQAGIPR TSDFNRGDNF
GVGYFEVNQK RGIRWNTAKG FLRPASQRPN LTIVTGAQVR ALTFDGKRCT GVTYRGAGQD
YTVAAREEVI LSAGAINSPQ LLELAGIGQP ERLQALGIPV RQALPGVGEN LQDHLQLRSV
VKVNGVPTLN TRASNWWGKA LIGMQYAFNQ SGPMSMAPSQ LGVFARSNPH VSRPDVEYHV
QPLSLDKFGD PLHAFNAFTA SVCNLRPTSR GTVHVTSADP FAAPTIAPNY LSTEEDRKVA
ADSLRLTRRI VAQPALAQYR PEEYLPGAAF QTDEELARAA GEIGTTIFHP VGTCRMGRAD
DANAVVDAQL RVRGIEGLRV VDASVMPTIT SGNTNSPTIM IAEKASEMIR AARKARARGE
AVPA
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