Gene Rpic_3538 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3538 
Symbol 
ID6286691 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3706538 
End bp3707278 
Gene Length741 bp 
Protein Length246 aa 
Translation table11 
GC content65% 
IMG OID642627122 
ProductABC transporter related 
Protein accessionYP_001901089 
Protein GI187930602 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0410] ABC-type branched-chain amino acid transport systems, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.0777529 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACGC CCGCGCTCCA GATCAAGGAC CTGCACGCCT GGTACGGCGA ATCGCACATC 
CTGCATGGTG TCGACCTGAC CGTGAACCGC GGCGAGGTGG TCACGCTGCT CGGCCGCAAC
GGTGCGGGCC GTACCACCAC GCTGCGCGCC ATCATGGGCC TGGTGGGCAC GCGCAAAGGC
TCCATCGTCG TGCATGACGC TGGCGGCCAG GGTGTGGAAA CGATCGACCT GCCCACGCAC
AAGATCGCCC ACTGCGGCAT CGGGTACTGC CCCGAGGAGC GCGGCATTTT CTCGAGCCTG
TCGTGCGAAG AGAACCTGAT GCTGCCGCCG GTGCTGAAGG GCCAGGTGGC CAAGACCGGC
AATGCCGGTA TGAGCATCGA CGAGATCTAC GAGATGTTCC CCAACCTGGC CGAGCGCCGC
CAAAGCCAGG GCACGCGCCT GTCGGGCGGC GAGCAGCAGA TGCTGGCGGT CGGGCGCATC
CTGCGCACCG GCGCGAACCT GTTGCTGCTC GACGAGATTT CCGAAGGACT GGCGCCGGTG
ATCGTGCAGG CGCTGGCCCG CATGATCCTG ATGCTCAAGA AGCGCGGCTA CACGGTGGTG
ATGGTGGAGC AGAACTTCCG CTTTGCCGCG CCGCTGGCAG ACCGGTTTTA TGTGATGGAA
CACGGCCGCA TCGTCGAGCG TTTCGAGGCG GCGCAGTTGC AGGACAAGAT GCCGGTGCTG
CACGAGCTGC TCGGCGTTTA A
 
Protein sequence
MSTPALQIKD LHAWYGESHI LHGVDLTVNR GEVVTLLGRN GAGRTTTLRA IMGLVGTRKG 
SIVVHDAGGQ GVETIDLPTH KIAHCGIGYC PEERGIFSSL SCEENLMLPP VLKGQVAKTG
NAGMSIDEIY EMFPNLAERR QSQGTRLSGG EQQMLAVGRI LRTGANLLLL DEISEGLAPV
IVQALARMIL MLKKRGYTVV MVEQNFRFAA PLADRFYVME HGRIVERFEA AQLQDKMPVL
HELLGV