Gene Rpic_3499 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3499 
Symbol 
ID6288654 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3669611 
End bp3670096 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content67% 
IMG OID642627084 
ProductCupin 2 conserved barrel domain protein 
Protein accessionYP_001901051 
Protein GI187930564 
COG category[S] Function unknown 
COG ID[COG1917] Uncharacterized conserved protein, contains double-stranded beta-helix domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.163476 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATCGCC ATCGTCCTGT TACCGTGATC CGGTCGGTTT CTGCCGCCGC CATCTTTGCC 
GGCTGCGCCG GCGCGTTTGC GCAAGCGTCG CAACCGGCTG CGGCAGCGGC TCCACCCTCG
GCACCGCCGC TCTCGGCGCA GATCATCAAC ATGGGCGGTA TGGCCCCGGA CGAGGTCGGC
CCAGTCATCG CCGAGATGGG TACGCTGCGC ACCAAGACGC TGGTGACGGC GGCCAATGGC
ACGGTGGGCG TCCAGGTCGG CACCGTGGCC AAGCACACGC ACACGTACTC CGACGAGATC
CAGTATGTAA TGTCGGGCAC GGCCACCGTC TGGCTCGACA ACGCGCCGCG CGAGGTCCGG
GCGGGTGATC TGATCGTGAT CCCTCGTGGC GTGGTGCACG GAACGCTGAC CACCAGCACG
GATTTCAAAT CGATGGCGAT CAAGCTGCCG CCGCAGCGCG CCGGCGATAC ACACAAGGTG
CCGTGA
 
Protein sequence
MHRHRPVTVI RSVSAAAIFA GCAGAFAQAS QPAAAAAPPS APPLSAQIIN MGGMAPDEVG 
PVIAEMGTLR TKTLVTAANG TVGVQVGTVA KHTHTYSDEI QYVMSGTATV WLDNAPREVR
AGDLIVIPRG VVHGTLTTST DFKSMAIKLP PQRAGDTHKV P