Gene Rpic_3400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3400 
Symbol 
ID6286491 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3559618 
End bp3561174 
Gene Length1557 bp 
Protein Length518 aa 
Translation table11 
GC content67% 
IMG OID642626985 
Productgeneral secretory pathway protein E 
Protein accessionYP_001900953 
Protein GI187930466 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 
TIGRFAM ID[TIGR02533] general secretory pathway protein E 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.925491 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAACAC ACGCTTCCAC CACCGACGTC AGCACGCTCG AGCCGCCCTC GCAGTCGGCC 
GTGCGGCTGG TGCCGTATGC GTTTGCGCGC GACGCCAAGT TGCTCGTCGC CCGCCAGGAC
GTCGACACGC TGGAGGTGTG GGTCTGCCCC GAAACCTCGC GCACGGCGCT GGCCGAACTC
GGCCGCGTGT TCGGGTCGCT GCATCTGGTG ACGCTCGACG CGGCGGCGCT ATCCACCGCC
ACGCAGACGG CCTACAACGC GCAAGACGGC AGCGCGGCCC AGGTCGTGGG TGAAGTGGAG
GGCGAAGTCG ACCTCTCGCG CCTGATGCAG GACATTCCGG CCGTGGAAGA CCTGCTCGAA
TCCGAAGACG ACGCGCCGAT CATCCGCATG ATCAACGCGC TGCTCACGCA GGCCGCGCGC
GAAGGCGCCT CGGATATCCA CATCGAGCCG TTCGAGAATG CATCCGTCGT GCGCTTTCGC
GTCGATGGGA CGCTGCGCGA CGTGGTGCGC CCGAAGAAAG CGCTGCACGG CGCGCTGATT
TCGCGCATCA AGATCATGGC GCAGCTCGAC ATTGCCGAAA AACGCCTGCC GCAGGACGGC
CGCATCACGC TGCGCGTGGG CGGTCGCCCG GTGGACGTGC GTGTGAGCAC CCTGCCCACC
GGCCACGGCG AGCGCGCCGT GCTGCGTCTG CTCGACAAGG AAGCCGGCCG GCTCGACCTC
GGCAAGCTCG GCATGGGCGC CGGCACCCTG GCGCGCTTCG ACCACCTGAT CAACCAGCCG
CACGGCATCG TGCTCGTCAC CGGCCCCACG GGTTCGGGCA AGACGACCAC GCTGTATGCG
GCGCTGTCGC GGCTCGACGC GGCGTCCACC AACATCATGA CGGTGGAAGA TCCGATCGAA
TACGACCTCG ACGGCATTGG CCAGACGCAG GTCAACCCAA AGATCGACAT GACGTTCGCC
AAGGCCCTGC GCGCCATCCT GCGCCAGGAC CCGGACGTGG TGATGATCGG GGAAATCCGC
GACCTGGAAA CCGCGCAGAT CGCCGTGCAG GCCTCGTTGA CGGGCCACCT GGTGCTGGCG
ACGCTGCACA CGAATGATTC CGCATCCGCC GTGACGCGCT TGATCGACAT GGGGATCGAG
CCGTTCCTGC TGTCTTCATC GCTGCTGGGT GTGCTGGCGC AGCGGCTGGT ACGCCGCCTG
TGCGTGCATT GCCGCCGCGA AGAAGTGCTC GAACTCACGC CTGCGGAAGT GGAAGCCGTG
GCCGGCACGC CCGTGGCCGA TGGTGTGGCA CCGGCCACGC CGGCACGCAA ATCGGTGTGG
CATCACGTCG GTTGCGAGCG TTGCAGCAAC TCTGGCTACC AGGGCCGGAC CGGCGTGTAC
GAACTGCTGA CCGTCACGCC CGAAATCCAG ACGATGATCC ACCGCCAGGC CGCTGAATCC
GAGATCAAGG CGTTCGCCAT CGGCCAGGGC ATGCAGACGA TGCGCTTGGA TGCACAGCGC
TGGATCGACA CCGGCGCCAC GTCGCTGGAA GAAGTGCTGC GTGTCACACG CGACTAA
 
Protein sequence
MATHASTTDV STLEPPSQSA VRLVPYAFAR DAKLLVARQD VDTLEVWVCP ETSRTALAEL 
GRVFGSLHLV TLDAAALSTA TQTAYNAQDG SAAQVVGEVE GEVDLSRLMQ DIPAVEDLLE
SEDDAPIIRM INALLTQAAR EGASDIHIEP FENASVVRFR VDGTLRDVVR PKKALHGALI
SRIKIMAQLD IAEKRLPQDG RITLRVGGRP VDVRVSTLPT GHGERAVLRL LDKEAGRLDL
GKLGMGAGTL ARFDHLINQP HGIVLVTGPT GSGKTTTLYA ALSRLDAAST NIMTVEDPIE
YDLDGIGQTQ VNPKIDMTFA KALRAILRQD PDVVMIGEIR DLETAQIAVQ ASLTGHLVLA
TLHTNDSASA VTRLIDMGIE PFLLSSSLLG VLAQRLVRRL CVHCRREEVL ELTPAEVEAV
AGTPVADGVA PATPARKSVW HHVGCERCSN SGYQGRTGVY ELLTVTPEIQ TMIHRQAAES
EIKAFAIGQG MQTMRLDAQR WIDTGATSLE EVLRVTRD