| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3399 |
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| Symbol | |
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| ID | 6286490 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 3557178 |
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| End bp | 3559601 |
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| Gene Length | 2424 bp |
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| Protein Length | 807 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642626984 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001900952 |
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| Protein GI | 187930465 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGAGA CCATGTACAA CGCCTCTTCC CGACTCACCG TTCGCGCCAT CGTCCTGGCA
TGCTGCGCAA CAATGGTGGC CGGCTCGATG CCAGTCTTTG CCGCCCCACC GGGCGCGGCA
TCCTCCCAGA ACGGGGCCGC CGGCAACCCG GGGGAGGAGG TCTCGCTGAA TTTCGTCAAC
GCGGATCTGG AATCGGTGGT CAGGGCCGTC GGCCAGGCCA CCGGCAAGAA CTTCATCGTC
GACCCGCGCG TGAAGGGCAC CGTCAACCTC GTCACCGAAA AGCCAGTGAC GCGCTCGCAG
GCACTCGAAT CGCTGGGCTC GATCCTGCGC ATGCAGGGCT ACGCGATTGT CGAGGGCAAC
GGTTTCACCA AGGTCGTGCC GGAAGCCGAC GCCAAGCTGC AAGGCTCGCC CACCAGCGTG
GGCGCGGCAG GCGCGCGCGG CGGCGAGCAG GTCGTCACGC AGGTCTTCCG CCTGCAGCAC
GAATCGGCCA ACAACCTGGT GCCGGTGCTG CGCCCAATGA TCGCGCCCAA CAACACGATC
ACCGCGTACC CGGCCAACAA CACGCTCGTC ATTACCGATT ACGCCGACAA CCTGCGCCGC
ATCGGCCGCA TCATCGCGTC GATCGACACG CCCGTGGCCG GCGAGACCGA ACTGATTCCG
CTGAAGAACG CCGTGGCCAT CGACGTGGCG GCCACGCTGC AAAAGCTGCT CGATCCGTCG
GCCGGTGGTG CAGGCGGCGC GGCCGGTGCC GGCGCGGCGC TGTCGGACCC AAGCCTGCGT
ACGTCGGTCG TGGCAGAGCC GCGTTCGAAT AGCGTGATGG TGCGCGCGTC GAGTGCGGCA
CGTCTGGCAC AGGCCAAACA ACTGATCGCC AAGCTCGATG TGCCGAATGC ACGGCCGGGC
AACATCTGGG TGGTGCCGCT CAAGAATGCC AACGCGGTGC AGCTGGCGAC GACGCTGCGC
GCGATCGTGG CGGCCGATGC CACGCTGTCG GCCTCCGCAT CGACCGGGCC GGGCGGCCAG
AGCGCCGCGC AAGGCGCGAC TTCGCAGCCG GCCGGCGGCG TGAGCAACCT GCAGAACCAG
AACACGCAGA ACACCAACTA CGGCAGCGGC TCGGGTTCGG GCAGCGGCTC GGGCAGCGGC
AGCTCGTCGT TCCGCGCCTC GTTCGGGCAG AACAACACGC CGACCACCGG CGGCATCATC
CAGGCCGATC CGGCCACCAA TGCGCTCATC ATCACCGCCA GCGAGCCGGT CTACCGCAAC
CTGCGCGCCG TGATCGACGA CCTCGACGCG CGCCGCGCGC AGGTCTATAT CGAATCGATG
ATCGTGGAAG TGACGGCCAC CAAGGCTTCG CAGTTGGGCA TCCAATGGAT GGCCGGCGCG
GGCGGGCCGA CCACCTTTTT TGGCGGTGGC ACCAACTTCG GCTCCGGCGC CAATAACCTG
ATCAACCTCG CGGGCACGAT TGCCACCATC ACCAGCGGCG GCATCGGCAG TACGGCCGCG
CAGACTGCCA TCGGCACGCT CTCAAACAGC GTTGGCCAGC TCAACGGCGG CAACTTCGGG
GTGTTCAACA GGGGCAGCGG TTTGGGCGCC ATCCTCAGCG CGCTGGGTTC GGACGGTTCG
GTCAACGTGC TGTCCACGCC CAACCTGATT ACGCTCGACA ACGAAGAGGC CAAGATCCTG
ATCGGCCAGA ACGTGCCGAT CACGACCGGC TCATATGCGC AGACCGGCGG CGCGGCTTCG
GTCACGCCGT TCCAGACCTT TGACCGCAAG GACGTCGGCA TCACGCTGCG CGTCAAGCCG
CAGATCACCG ATGGCGGGCT GGTGAAGATG CAGATCTTCC AGGAGTCGTC GGCCGTGGTG
CCGGGCACGC AGAATGCCAC GCAGGGCCCG ACCACCAACG TGCGCTCGAT CGAGACCAAC
GTGCTGGCCA ACGACGGCCA GGTCGTCGTG CTGGGCGGAC TGCTGGAAGA CAACTACCAG
GACGGTGAGC AGAAGGTGCC GGGCCTGGGC GACATCCCCA TCCTGGGTGC GCTGTTCCGC
TCGGAGAACA AGACGCGTGT GAAGACCAAC CTGCTGGTGT TCCTGCGTCC GATCATCCTG
CGTACGGCCG ATGCGACCGG CACGCTGTCG GACAACCGCT ACAACTACAT GCGCGACACG
CAGCAGGGCT TTGTCTCGCC AAACATGCTG CCGACCACGT CGGACAAGGA CACACCGGTG
CTGCCCGCGC CCAACGCCAT GCGCCCGGCT GAAAACTACG GCGACGTGTC GATCGTGCCG
AAGGGCCCGG CCGGTACGCA GGTGCCCCCG GGCGCCCCGA TGCCGATGCC GCAAGGCACC
ACGCGCAGCC AGCCGCGCCT GCAGAACTTC GCCGCGCCCA CCTCGGGCGG CTACGACGGC
AACGCGCCGC GTAATGGCGG CTGA
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| Protein sequence | MNETMYNASS RLTVRAIVLA CCATMVAGSM PVFAAPPGAA SSQNGAAGNP GEEVSLNFVN
ADLESVVRAV GQATGKNFIV DPRVKGTVNL VTEKPVTRSQ ALESLGSILR MQGYAIVEGN
GFTKVVPEAD AKLQGSPTSV GAAGARGGEQ VVTQVFRLQH ESANNLVPVL RPMIAPNNTI
TAYPANNTLV ITDYADNLRR IGRIIASIDT PVAGETELIP LKNAVAIDVA ATLQKLLDPS
AGGAGGAAGA GAALSDPSLR TSVVAEPRSN SVMVRASSAA RLAQAKQLIA KLDVPNARPG
NIWVVPLKNA NAVQLATTLR AIVAADATLS ASASTGPGGQ SAAQGATSQP AGGVSNLQNQ
NTQNTNYGSG SGSGSGSGSG SSSFRASFGQ NNTPTTGGII QADPATNALI ITASEPVYRN
LRAVIDDLDA RRAQVYIESM IVEVTATKAS QLGIQWMAGA GGPTTFFGGG TNFGSGANNL
INLAGTIATI TSGGIGSTAA QTAIGTLSNS VGQLNGGNFG VFNRGSGLGA ILSALGSDGS
VNVLSTPNLI TLDNEEAKIL IGQNVPITTG SYAQTGGAAS VTPFQTFDRK DVGITLRVKP
QITDGGLVKM QIFQESSAVV PGTQNATQGP TTNVRSIETN VLANDGQVVV LGGLLEDNYQ
DGEQKVPGLG DIPILGALFR SENKTRVKTN LLVFLRPIIL RTADATGTLS DNRYNYMRDT
QQGFVSPNML PTTSDKDTPV LPAPNAMRPA ENYGDVSIVP KGPAGTQVPP GAPMPMPQGT
TRSQPRLQNF AAPTSGGYDG NAPRNGG
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