Gene Rpic_3397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3397 
Symbol 
ID6289529 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3555711 
End bp3556280 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content69% 
IMG OID642626982 
ProductGeneral secretion pathway M protein 
Protein accessionYP_001900950 
Protein GI187930463 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3149] Type II secretory pathway, component PulM 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGACTT CCTCCCCCTC TTCTTCCCGA CCGGCATCCC GCCGCCTGCC GCGCATTGGC 
GTGCCGGACT CGGTGCGCGA CGCGGCCACG ACGTTCTGGA TGCAGCGCGA ACCGCGCGAA
CGCCGCATCC TGGCCGGTGG CGGCGTGGTG CTGCTGTTGG TGATCGTCTA CCTCGTGCTG
TGGGAGCCGG CCTTCGAAGG CCAGCGCCGC ATCGAGAAAG CCCTGCCGCA AATGCGCAGC
CAACTCGCCG AGATGGAAAC GCTGGGCCAG GAAGCGCGCG GCCTGTCTGC CATTGCCGCC
GCGCCGGTGC CGCGCGGTGC GGAATTGCAG CAGGCGCTCA ACACGAGCCT CACCAACCAC
GGCCTGAAGG CCACGCGCAT GGCGATGTCG GGCGAGAGCG TGCAGGTGCA ACTGGACAAG
GTGCCCTTTG GCGCTGTCGC CGAATGGCTG CAGGAGGTGC GGCAGGCCCA GCGCATGAAG
GTGATCGACA CGAACATCAA GTACGTGGGC GCGACGGCCC TGGTCAACGT GACGGCGACG
CTGCAAGGCC CCGCCGCCAC AGGCCGCTGA
 
Protein sequence
MATSSPSSSR PASRRLPRIG VPDSVRDAAT TFWMQREPRE RRILAGGGVV LLLVIVYLVL 
WEPAFEGQRR IEKALPQMRS QLAEMETLGQ EARGLSAIAA APVPRGAELQ QALNTSLTNH
GLKATRMAMS GESVQVQLDK VPFGAVAEWL QEVRQAQRMK VIDTNIKYVG ATALVNVTAT
LQGPAATGR