Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_3333 |
Symbol | |
ID | 6286281 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | + |
Start bp | 3487236 |
End bp | 3488972 |
Gene Length | 1737 bp |
Protein Length | 578 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642626918 |
Product | conserved hypothetical signal peptide protein |
Protein accession | YP_001900887 |
Protein GI | 187930400 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.577812 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAACAT CCTGGCGCAT GACGCTTCAG ATCAGTGCCA TTGCACTGGC GAGCGCCCTG GCAGTCGGCG CAGCCCATGC CGGCGAAGCC GAAGCCAAGA AGTGGATCAG CAGCGAATTC CAGCCCAGCA CGCTGTCGCA AGACAAGCAG ATGGCGGAAA TGAAGTGGTT CATCGACGCC GCGGCCAAGC TCAAGGCAAA GGGCGTGACC GAGATCCACG TCGTGTCGGA AACGCTCGAC ACCCACGCCT ATGAATCGAA GACGCTCGCC AAGGCCTTCG AAGAAATCAC CGGCATCAAG GTCAAGCACG ACATCATGCA GGAAGGCGAT GTCGTCGAAA AGCTGCAGAC CTCGATGCAG TCGGGCAAGA GCATCTATGA CGGCTGGATC TCCGACTCCG ACCTGATCGG CACGCACTAT CGTTACGGCG TGATCATGCC GCTGTCGGAC TACATGGCCG GCGAAGGCAA GGAGTTCACC AACCCGGGCC TGGACCTGAA GGATTTCATC GGCACGAGTT TCACCACCGC GTCTGACGGC AAGCTGTACC AGTTGCCCGA CCAGCAGTTC GCCAACCTGT ACTGGTTCCG CGCCGACTGG TTCGCGCGCA AGGACCTGCA AGACAAGTTC AAGGCCAAGT ACGGCTACGA CCTGGGCGTG CCCGTCAACT GGACGGCCTA TGAAGACATC GCCAACTTCT TCACCAACGA CGTGAAGGAG CTGGACGGCA AGCGCATCTA CGGCCACATG GATTACGGCA AGAAGGATCC GTCGCTCGGC TGGCGCTTTA CCGATGCGTG GCTGTCGATG GCCGGTTCGG CCGACAAGGG CATCCCGAAC GGCCTGCCCG TCGACGAGTG GGGTATCCGT GCGGAAAACT GCGCGCCGGT AGGCGCCTCG ACGTCGCGCG GCGGCGCCAC CAACAGCCCG GCCGCCGTGT ACGCCCTCAC CAAGTACATC GACTGGATGA AGAAGTACGC GCCGCCCGAA GCGACCGGCA TGACCTTCAA CGAAGCCGGC CCCGTGCCCG CGCAAGGCCA CATCGCCCAG CAGGTGTTCT GGTACAGCGC CTTTACCGCG CCGATGACCA AGCCGGGCCC GGTCGTGAAC GCCGACGGCT CGCCGAAGTG GCGCATGGCC CCCTCGCCGC ACGGCCCGTA CTGGAAGGAC GGCATGCAGA ACGGCTACCA GGACGTCGGC TCGTGGACGT TCTTCAAGTC CACGCCGTTC GAGCGCCGCT CGGCCGCGTG GCTGTACGCG CAGTTCGTCA CGTCGAAGAC CGTGTCGCTC AAGAAGTCGA TCACCGGCCT CACGTTCATT CGCGACTCCG ATATCCACAG CGACTACTTC ACCAAGAACG CGGCCAAGTA CGGCGGCCTG ATCGAGTTCT ACCGCAGCCC GGCCCGCGTG GCCTGGACGC CGACCGGCAA CAACGTGCCC GACTATCCGA AGCTGGCGCA GCTCTGGTGG AAGAACGTCG CCACGGCCGT CACGGGCGAG AAGACGCCGC AAGGCGCGAT GGACAACCTG GCCAAGGAAA TGGACCAGGT GATGGGCCGC CTGCAGCGCG CCGGCATGAA GAACTGCGCG CCCAAGCTGA ACCCGGAAAG CGATCCGTCG AAGTGGCTGT CGACCGAACA CGCCCCGTGG AAGAAGCTCG ACAACGAGCG ACCGAAGGGT GAGACGGTGG CCTACGACAA GCTGCTGGCT GCCTGGAAGG CAGGCAAGGT ACGTTAA
|
Protein sequence | MKTSWRMTLQ ISAIALASAL AVGAAHAGEA EAKKWISSEF QPSTLSQDKQ MAEMKWFIDA AAKLKAKGVT EIHVVSETLD THAYESKTLA KAFEEITGIK VKHDIMQEGD VVEKLQTSMQ SGKSIYDGWI SDSDLIGTHY RYGVIMPLSD YMAGEGKEFT NPGLDLKDFI GTSFTTASDG KLYQLPDQQF ANLYWFRADW FARKDLQDKF KAKYGYDLGV PVNWTAYEDI ANFFTNDVKE LDGKRIYGHM DYGKKDPSLG WRFTDAWLSM AGSADKGIPN GLPVDEWGIR AENCAPVGAS TSRGGATNSP AAVYALTKYI DWMKKYAPPE ATGMTFNEAG PVPAQGHIAQ QVFWYSAFTA PMTKPGPVVN ADGSPKWRMA PSPHGPYWKD GMQNGYQDVG SWTFFKSTPF ERRSAAWLYA QFVTSKTVSL KKSITGLTFI RDSDIHSDYF TKNAAKYGGL IEFYRSPARV AWTPTGNNVP DYPKLAQLWW KNVATAVTGE KTPQGAMDNL AKEMDQVMGR LQRAGMKNCA PKLNPESDPS KWLSTEHAPW KKLDNERPKG ETVAYDKLLA AWKAGKVR
|
| |