Gene Rpic_3333 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3333 
Symbol 
ID6286281 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3487236 
End bp3488972 
Gene Length1737 bp 
Protein Length578 aa 
Translation table11 
GC content63% 
IMG OID642626918 
Productconserved hypothetical signal peptide protein 
Protein accessionYP_001900887 
Protein GI187930400 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.577812 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACAT CCTGGCGCAT GACGCTTCAG ATCAGTGCCA TTGCACTGGC GAGCGCCCTG 
GCAGTCGGCG CAGCCCATGC CGGCGAAGCC GAAGCCAAGA AGTGGATCAG CAGCGAATTC
CAGCCCAGCA CGCTGTCGCA AGACAAGCAG ATGGCGGAAA TGAAGTGGTT CATCGACGCC
GCGGCCAAGC TCAAGGCAAA GGGCGTGACC GAGATCCACG TCGTGTCGGA AACGCTCGAC
ACCCACGCCT ATGAATCGAA GACGCTCGCC AAGGCCTTCG AAGAAATCAC CGGCATCAAG
GTCAAGCACG ACATCATGCA GGAAGGCGAT GTCGTCGAAA AGCTGCAGAC CTCGATGCAG
TCGGGCAAGA GCATCTATGA CGGCTGGATC TCCGACTCCG ACCTGATCGG CACGCACTAT
CGTTACGGCG TGATCATGCC GCTGTCGGAC TACATGGCCG GCGAAGGCAA GGAGTTCACC
AACCCGGGCC TGGACCTGAA GGATTTCATC GGCACGAGTT TCACCACCGC GTCTGACGGC
AAGCTGTACC AGTTGCCCGA CCAGCAGTTC GCCAACCTGT ACTGGTTCCG CGCCGACTGG
TTCGCGCGCA AGGACCTGCA AGACAAGTTC AAGGCCAAGT ACGGCTACGA CCTGGGCGTG
CCCGTCAACT GGACGGCCTA TGAAGACATC GCCAACTTCT TCACCAACGA CGTGAAGGAG
CTGGACGGCA AGCGCATCTA CGGCCACATG GATTACGGCA AGAAGGATCC GTCGCTCGGC
TGGCGCTTTA CCGATGCGTG GCTGTCGATG GCCGGTTCGG CCGACAAGGG CATCCCGAAC
GGCCTGCCCG TCGACGAGTG GGGTATCCGT GCGGAAAACT GCGCGCCGGT AGGCGCCTCG
ACGTCGCGCG GCGGCGCCAC CAACAGCCCG GCCGCCGTGT ACGCCCTCAC CAAGTACATC
GACTGGATGA AGAAGTACGC GCCGCCCGAA GCGACCGGCA TGACCTTCAA CGAAGCCGGC
CCCGTGCCCG CGCAAGGCCA CATCGCCCAG CAGGTGTTCT GGTACAGCGC CTTTACCGCG
CCGATGACCA AGCCGGGCCC GGTCGTGAAC GCCGACGGCT CGCCGAAGTG GCGCATGGCC
CCCTCGCCGC ACGGCCCGTA CTGGAAGGAC GGCATGCAGA ACGGCTACCA GGACGTCGGC
TCGTGGACGT TCTTCAAGTC CACGCCGTTC GAGCGCCGCT CGGCCGCGTG GCTGTACGCG
CAGTTCGTCA CGTCGAAGAC CGTGTCGCTC AAGAAGTCGA TCACCGGCCT CACGTTCATT
CGCGACTCCG ATATCCACAG CGACTACTTC ACCAAGAACG CGGCCAAGTA CGGCGGCCTG
ATCGAGTTCT ACCGCAGCCC GGCCCGCGTG GCCTGGACGC CGACCGGCAA CAACGTGCCC
GACTATCCGA AGCTGGCGCA GCTCTGGTGG AAGAACGTCG CCACGGCCGT CACGGGCGAG
AAGACGCCGC AAGGCGCGAT GGACAACCTG GCCAAGGAAA TGGACCAGGT GATGGGCCGC
CTGCAGCGCG CCGGCATGAA GAACTGCGCG CCCAAGCTGA ACCCGGAAAG CGATCCGTCG
AAGTGGCTGT CGACCGAACA CGCCCCGTGG AAGAAGCTCG ACAACGAGCG ACCGAAGGGT
GAGACGGTGG CCTACGACAA GCTGCTGGCT GCCTGGAAGG CAGGCAAGGT ACGTTAA
 
Protein sequence
MKTSWRMTLQ ISAIALASAL AVGAAHAGEA EAKKWISSEF QPSTLSQDKQ MAEMKWFIDA 
AAKLKAKGVT EIHVVSETLD THAYESKTLA KAFEEITGIK VKHDIMQEGD VVEKLQTSMQ
SGKSIYDGWI SDSDLIGTHY RYGVIMPLSD YMAGEGKEFT NPGLDLKDFI GTSFTTASDG
KLYQLPDQQF ANLYWFRADW FARKDLQDKF KAKYGYDLGV PVNWTAYEDI ANFFTNDVKE
LDGKRIYGHM DYGKKDPSLG WRFTDAWLSM AGSADKGIPN GLPVDEWGIR AENCAPVGAS
TSRGGATNSP AAVYALTKYI DWMKKYAPPE ATGMTFNEAG PVPAQGHIAQ QVFWYSAFTA
PMTKPGPVVN ADGSPKWRMA PSPHGPYWKD GMQNGYQDVG SWTFFKSTPF ERRSAAWLYA
QFVTSKTVSL KKSITGLTFI RDSDIHSDYF TKNAAKYGGL IEFYRSPARV AWTPTGNNVP
DYPKLAQLWW KNVATAVTGE KTPQGAMDNL AKEMDQVMGR LQRAGMKNCA PKLNPESDPS
KWLSTEHAPW KKLDNERPKG ETVAYDKLLA AWKAGKVR