Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_3303 |
Symbol | |
ID | 6287558 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 3440535 |
End bp | 3441794 |
Gene Length | 1260 bp |
Protein Length | 419 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 642626879 |
Product | major facilitator superfamily MFS_1 |
Protein accession | YP_001900857 |
Protein GI | 187930370 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00459923 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.0115406 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCACCG AAGCCCCTGC CGTCGCCGTT TCCAACCCGT CGCCCGCCGA CGCGCTCCCC CGCGGTGCCA CGCCGTTGTT TGCAGCCGCC GTCGGGCTCA TCGTCATCAA CCTGTTCGGC ATCCAGCCGC TTGTCGCCGA GATCGCCGCA AGTATCGGCT GGACCACCGC CGCCACCGGG CTGCTGGTGA CTGCCACACT CGTCGGCTAC GGCATCGGCC TGTTGCTGCT GATGCCGCTG ACCGATTTGC AGGACAACCG CGCGCTGGCC TCGCGCACGC TGTGGGGCGC GGTGGCTTCG CTGGCGCTGA CCACCGTAGC GCACAGCGGC CGGGTGCTGA TGCTGGCCGC CTTCGCCATC GGCCTTACGT CGACGGTCAT TCAGATGCTG ATTGCGCTGG CAGGGCGCCT GGCCGCAGAC CACCGGCGCG GGCGCGTGCT CGGCGACATC ATGATCGGCC TGAACCTGGG CATCCTGCTG TCGCGCCCGG CGGCCAGCCT GATCGCGGCG CAATGGGGCT GGCGTGCGTT CTACGGCGCA TCTGCGGTGG CGATTGCCGT GCTGGCCGTC CTTCTGCCGC GTGTGATGCC GACCTTCGTG CCGCCGCGTG CGCTGTCGTA CGGTGCGTTG CTCAAGTCGT ATGGCCATCT TCTGCGCACC GAACCGGTAT TGCGTCGCCG CGCTGCCACC CAAGCTTTGC TGATGGCGGC CTTCACGCTG TTCTGGACCG CTGTTGCACT GCGGCTGGCG GCCGCGCCGT TCCATCTTTC GCAGAACGGC ATCGGCATCT TTGCGCTGTG CGGCGCGGCC GGCGTCGTGG CGGCGCCCAT CGCCGGACGG CTGGCGGATC GCGGCTTGGT GCGCGTTGGT ACGCTGCTCG CGCATGGCAG TGCGGCGGCG GGTCTGCTGT TGGCGCTGGC TTCGGCGCTG CTGCCAGACC TGAGCGTCCC TGTCATGTTG GTGATGCTGG CCGCCGCAGC GTTGTTGCTG GACTTTGGCG CCATCGGCGA CCAGGCGCTC GGCCGCTATA TGGTCAACGC GTTGCCGCCC GAGGTCCGGG GGCGCGTGAA CGGCCTGTAC ACCGGGGCGT TCTTCTTTGG TGCGGCTGCA GGCGGCGGTT TGGCCGGTGC GGCCTGGTTG CGCGCCGGCT GGATCGGCGT ATCGGTTCTC GCGCTCGGGT TTGTGGTGGC CGCTGCGCTC GTTTTCGTAT GGCCCACCAG TGCGCAGCGT GCCATCGGCG CCACACCGCG CCGCTGCTGA
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Protein sequence | MTTEAPAVAV SNPSPADALP RGATPLFAAA VGLIVINLFG IQPLVAEIAA SIGWTTAATG LLVTATLVGY GIGLLLLMPL TDLQDNRALA SRTLWGAVAS LALTTVAHSG RVLMLAAFAI GLTSTVIQML IALAGRLAAD HRRGRVLGDI MIGLNLGILL SRPAASLIAA QWGWRAFYGA SAVAIAVLAV LLPRVMPTFV PPRALSYGAL LKSYGHLLRT EPVLRRRAAT QALLMAAFTL FWTAVALRLA AAPFHLSQNG IGIFALCGAA GVVAAPIAGR LADRGLVRVG TLLAHGSAAA GLLLALASAL LPDLSVPVML VMLAAAALLL DFGAIGDQAL GRYMVNALPP EVRGRVNGLY TGAFFFGAAA GGGLAGAAWL RAGWIGVSVL ALGFVVAAAL VFVWPTSAQR AIGATPRRC
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