| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3280 |
|---|
| Symbol | rpsE |
|---|
| ID | 6288295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 3426448 |
|---|
| End bp | 3426966 |
|---|
| Gene Length | 519 bp |
|---|
| Protein Length | 172 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642626856 |
|---|
| Product | 30S ribosomal protein S5 |
|---|
| Protein accession | YP_001900834 |
|---|
| Protein GI | 187930347 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0098] Ribosomal protein S5 |
|---|
| TIGRFAM ID | [TIGR01021] ribosomal protein S5, bacterial/organelle type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00328937 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0000684502 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAA TTCAACCTAA GGTCCAAGGG GACGAACGCG ACGACGGTCT TCGCGAGAAG
ATGATCGCGG TCAACCGTGT GACCAAGGTG GTCAAGGGCG GCCGGATTCT CGGTTTCGCT
GCTCTGACTG TGGTCGGCGA CGGCGACGGC CGTATCGGCA TGGGCAAGGG TAAGGCTAAG
GAAGTCCCCG TAGCCGTGCA GAAGGCAATG GACGAGGCTC GTCGCAAGAT GGTCAAGGTC
CCGCTGAAGA ACGGTACGCT GCAGCACGAA GTGGTTGGCA AGCATGGCGC CGCAAAGGTG
CAGATGATGC CCGCGAAGGA CGGTACCGGC GTGATCGCCG GCGGCCCGAT GCGCGCTATC
TTCGAAGTGA TGGGCGTGAC GAACATCGTG ACCAAGTCGC ACGGTTCGAC CAATCCTTAC
AACATGGTGC GCGCAACGCT GGATGGCCTG CGCAAGATGA GCACCCCGGC CGAAGTTGCC
GCCAAGCGTG GCAAGTCGGT CGAAGAGATC CTCGGCTAA
|
|---|
| Protein sequence | MAKIQPKVQG DERDDGLREK MIAVNRVTKV VKGGRILGFA ALTVVGDGDG RIGMGKGKAK
EVPVAVQKAM DEARRKMVKV PLKNGTLQHE VVGKHGAAKV QMMPAKDGTG VIAGGPMRAI
FEVMGVTNIV TKSHGSTNPY NMVRATLDGL RKMSTPAEVA AKRGKSVEEI LG
|
|---|
| |