Gene Rpic_3277 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3277 
SymbolsecY 
ID6287425 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3424413 
End bp3425735 
Gene Length1323 bp 
Protein Length440 aa 
Translation table11 
GC content59% 
IMG OID642626853 
Productpreprotein translocase subunit SecY 
Protein accessionYP_001900831 
Protein GI187930344 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0201] Preprotein translocase subunit SecY 
TIGRFAM ID[TIGR00967] preprotein translocase, SecY subunit
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.821024 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.000244814 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCCCAGG CCAAGAACAC GGCCAAGTAC GGCGATCTTC GCCGTCGGCT GGTGTTCCTG 
GTGCTGGCAT TGCTGGTGTA CCGGATCGGC GCGCACATTC CTGTGCCGGG TATCGATCCG
GATCAACTGG CGCAGCTTTT CCAACGGCAG TCGGGTGGCA TCCTCGGGAT GTTTAACCTG
TTCTCCGGCG GCGCGCTGTC GCGTTTCACA GTGTTTGCGT TGGGGATCAT GCCGTACATC
TCGGCGTCGA TCATCATGCA GCTGCTGACG ATCGTGCTGC CGCAGCTGGA ATCGTTGAAG
AAGGAAGGCC AGGCCGGCCA GCGCAAGATT ACGCAGTACA CGCGCTACGG CACGGTCATC
CTGGCGACGT TCCAGGCGCT AGGGATTGCA GTAGCCCTGG AAGCGCAGCC CGGTCTGGTG
CTGGATCCGG GTCTGATGTT CCGGGCCACC GCGGTGATCA CGCTGGTGAC GGGCACGATG
TTCCTGATGT GGCTGGGTGA GCAGATCACC GAGCGTGGTC TGGGCAACGG GATCTCGATC
ATCATTTTTG GCGGGATTGC TGCAGGCCTT CCCAACGCGA TTGGCGGGCT GTTCGAGCTG
GTGCGTACGG GTTCGATGGG AATTTTCTCG GCGATCCTGG TGGTGGCGAT TATTGGTGCG
GTGACGTTTG TGGTCGTGTT CATCGAACGC GGCCAGCGCA AGATCCTCGT CAATTACGCC
AAGCGGCAGG TTGGTAACAA GATTTATGGC GGACAGTCGT CGCATCTGCC GCTGAAGTTG
AATATGGCCG GGGTGATTCC GCCGATCTTT GCATCGTCGA TCATTCTGTT CCCGGCCACG
ATCGCGGGCT GGTTTACAGC TGGCAACTCG ACGAATCCGG TGGCACGGGT TGTCAAGGAC
TTGGCAGCAA CGCTGTCGCC GGGTCAGCCG GTCTACATCC TGCTGTATGC GGCGGCGATC
ATCTTCTTCT GTTTCTTCTA CACCGCACTG GTTTATAACA GCCGGGAAGT GGCAGATAAC
CTGAAGAAGA GTGGGGCGTT CATTCCGGGC ATCCGTCCGG GCGAGCAAAC CACGCGGTAT
ATCGACAAGA TTCTGGTGCG TCTGACCCTG GCGGGTGCGA TCTACATCAC GCTGGTGTGT
CTGTTGCCGG AGTTCTTGGT GCTGCGCTGG AATGTGCCGT TCTACTTCGG TGGGACGTCC
CTGTTGATCA TCGTGGTTGT CACGATGGAC TTCATGGCGC AAGTGCAGTC CTACGTGATG
TCTCAGCAGT ACGAGTCTTT GATGAAGAAG GCGAATTTCA AGGGAAACCT GACACTCCGC
TAG
 
Protein sequence
MAQAKNTAKY GDLRRRLVFL VLALLVYRIG AHIPVPGIDP DQLAQLFQRQ SGGILGMFNL 
FSGGALSRFT VFALGIMPYI SASIIMQLLT IVLPQLESLK KEGQAGQRKI TQYTRYGTVI
LATFQALGIA VALEAQPGLV LDPGLMFRAT AVITLVTGTM FLMWLGEQIT ERGLGNGISI
IIFGGIAAGL PNAIGGLFEL VRTGSMGIFS AILVVAIIGA VTFVVVFIER GQRKILVNYA
KRQVGNKIYG GQSSHLPLKL NMAGVIPPIF ASSIILFPAT IAGWFTAGNS TNPVARVVKD
LAATLSPGQP VYILLYAAAI IFFCFFYTAL VYNSREVADN LKKSGAFIPG IRPGEQTTRY
IDKILVRLTL AGAIYITLVC LLPEFLVLRW NVPFYFGGTS LLIIVVVTMD FMAQVQSYVM
SQQYESLMKK ANFKGNLTLR