| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3237 |
|---|
| Symbol | |
|---|
| ID | 6286728 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 3382208 |
|---|
| End bp | 3383011 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642626813 |
|---|
| Product | VacJ family lipoprotein |
|---|
| Protein accession | YP_001900791 |
|---|
| Protein GI | 187930304 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2853] Surface lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.464937 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAA CAACATCCAT CCGTATGCTG CGCGGCATTG CGCTGGCTCT GGCTGCAGGT
ACCACCCTGC TGGCCGGCTG TGCGACGGGA CCGAATGCTA ATCCGGCTGA CCCGATCGAA
CCGTTCAACC GCGAAGTCTT CCGCATCAAC GAAGACCTCG ACAAGGGCGT GCTGAAGCCA
GTTGCGCAAA CGTATGTCGA TGTGGTGCCG TCGCCAGCGC GCACGGCGGT GTCGAATTTC
TTCTCGAATG CGGGCGATGT CTATTCGGCC GTCAACAACC TGCTGCAATT GAAGGGCACC
GCCGCGCTGG AAGACACCAT GCGCGTGGCG ATCAATACCG TGCTGGGTCT GGGTGGCCTG
ATCGACATTG CGTCGGACGC CGGCCTGCCC AAGCACAAGG AAGACTTCGG CCAGACGCTG
GGCGTATGGG GTGTGCCGTC GGGTCCGTAC GTCGTGTGGC CGCTGCTCGG CCCGAGCACT
GCACGTGACA CCGTGGGGTT CCTGGTCGAC TGGCAGATGG ACCCGCTCAC GTACTGGCAC
GACAGCGCGA TCACCTACTC GCTAGCCGCG TTGCGCGTGG TTGACGTGCG CGCGAACCTG
CTCGGGGCCA GCAATGTGTT CGAACAGGCT GCGGTCGACA AGTACACCTT CCTGCGCGAT
GCCTATCTGC AGCGCCGCCG CTACCTGATC TATGACGGCA ACCTGCCGGA AGACCAGGAC
AACACGAAGT CGCCGGATAC CGGTGACGCG ACGGTCTCGC CGTACCATCG CTTCACCCCC
AACTGGCCGG TGTTCCGCCG CTGA
|
|---|
| Protein sequence | MKLTTSIRML RGIALALAAG TTLLAGCATG PNANPADPIE PFNREVFRIN EDLDKGVLKP
VAQTYVDVVP SPARTAVSNF FSNAGDVYSA VNNLLQLKGT AALEDTMRVA INTVLGLGGL
IDIASDAGLP KHKEDFGQTL GVWGVPSGPY VVWPLLGPST ARDTVGFLVD WQMDPLTYWH
DSAITYSLAA LRVVDVRANL LGASNVFEQA AVDKYTFLRD AYLQRRRYLI YDGNLPEDQD
NTKSPDTGDA TVSPYHRFTP NWPVFRR
|
|---|
| |