| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3193 |
|---|
| Symbol | |
|---|
| ID | 6289710 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 3345327 |
|---|
| End bp | 3346070 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642626768 |
|---|
| Product | P-type conjugative transfer protein TrbJ |
|---|
| Protein accession | YP_001900747 |
|---|
| Protein GI | 187930260 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5314] Conjugal transfer/entry exclusion protein |
|---|
| TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.213986 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTCG AAACGCGCAT CGCAGGCTTC ATCCTTGCTG CCGCCATTGC CACGCCGGCC
TTGGCCGGCA CCGTGGCGGG GACTGGCGGT TCGACCGAAG TCACGCAAAT CCTGAACAAC
CTGCAGCTCA TCCAAGCCTA TGAGCAGCAG GTGCAGCAGT ATGTGCTTCA GGGCAAGCAG
GTCGAGGCCG AGCTACGGAA CTTGATCTCC AACCCGACAT CGATACTGGG TGACGATGTC
GGCAAGATGA TCAACACCAT TGGGTCGATC TACAACGGCG GGCAGTCCAT TGGCTACAAC
CTCGCGCAGA TCGACCAGAA CTTTGCGCGA ACGTTCAAGA GTCCAACGGC GGGCAATCTC
GCCAAGATGT TCACCTCCTG GCACCAGACC AATACGGACA CGCTTCAGTC TGCGCTCCGC
GCCGTTGGGG CACAGCGCGA CAACTACGCA TCTAGCCAGG CTGCGCTGAC CGACCTCTAC
AACCGGAGCC AGACCACCAA CGGCAATCTC GATGCCCTGC AGACGCTCTC TCAGATCAAC
GTGCGCCAGA TCCAAGAATT GCAGTCTCTC AAAGAGATGA TGGCGACCCA AACGACAGCG
GCGGCGACCT ACATGGCGAC ACAGAATGCG AAGGACCAGA AGGGGCTGGA TGACGCCACG
GGGCTTATGC GGCCTTCCGG AAGGCCGATA CCCTCGGTGG AGTATGCGCC TGCGCCGAAG
TGGAAGGGCT TTCTCCAAAA CTGA
|
|---|
| Protein sequence | MKLETRIAGF ILAAAIATPA LAGTVAGTGG STEVTQILNN LQLIQAYEQQ VQQYVLQGKQ
VEAELRNLIS NPTSILGDDV GKMINTIGSI YNGGQSIGYN LAQIDQNFAR TFKSPTAGNL
AKMFTSWHQT NTDTLQSALR AVGAQRDNYA SSQAALTDLY NRSQTTNGNL DALQTLSQIN
VRQIQELQSL KEMMATQTTA AATYMATQNA KDQKGLDDAT GLMRPSGRPI PSVEYAPAPK
WKGFLQN
|
|---|
| |