| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3172 |
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| Symbol | |
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| ID | 6288847 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 3322510 |
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| End bp | 3325497 |
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| Gene Length | 2988 bp |
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| Protein Length | 995 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642626747 |
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| Product | type I site-specific deoxyribonuclease, HsdR family |
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| Protein accession | YP_001900726 |
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| Protein GI | 187930239 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000000957293 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | GTGTTTAACG AAGCCAACAC CGTCGAAGCC TACGTCCGCG ACCTGCTCGT TGGCCCGATC
AAGGCAGTCC CTGCCAACAC CGTTCAGGAA CCTCAAGGTA GCTACGGCCC CAGTCCCAAA
GGCATCGGCT GGCGCTATAC CGCCCCTGCT GACGTGCCGA GACAGATTCA GGAAGTGCTG
GTCGAGCCCT GGCTACGCGA TGCGCTGATT CGCCTGAACC CCGAAATTGC CAGTCAGCCG
GACCGCGCCG ATGAAGTGCT CTACAAGCTG CGCGCCATCG TGCTGTCGGT GCGCTCGGAT
GGTCTGATCC GAGCCAACGA GGAAATGACT GCGTGGATGC GTGGTGAGCG CTCGATGCCC
TTCGGCCACA ACAACGAGCA TGTGCCGGTG CGGCTGATCG ACTTGGATGA CCTATCGCAG
AACCATTACA TCGTCACCCA GCAGTACACC TACCGTGCTG GCCCCACCGA GCGCCGCGCC
GATCTGGTGC TCTTGGTCAA CGGACTGCCG CTGGTTCTGA TCGAGGCGAA GACGCCGGTC
AAGAAGTGCA TCAGCTGGGT CGACGGTGCG GTACAGGTGC ACGACGACTA TGAGAAGTTC
GTGCCGGAGC TCTTCGTTTG CAACGTGTTC TCGGTGGCCA CTGAGGGTAA GGCCTACCAC
TATGGCTCCA TCGGGCTGCC TGTCAAGGAC TGGGGCCCTT GGCATCTGGA TGGAGATGGC
CACGATGGTC AGCACCATCC GCTGAAATCG CTCAAGCTGT CCACCGAGAG CATGCTGCGC
CCGCATGTGG TGCTGGATGT TCTGGGCAGC TTCACCCTGT TCGCCACCAA CAAGAAAAAG
CAGCGCATCA AGATCATTTG CCGCTACCAG CAGTTTGAAG CGGCCAACAA GATCGTCGAG
CGCGTGCTGG CGGGTTACCC CAGGAAAGGC CTGATCTGGC ACTTCCAGGG TTCGGGAAAG
TCACTGCTGA TGGTGTTTGC CGCGCAGAAG CTGCGTATGC ACGCAGGATT GAAGAACCCT
ACCGTGCTGA TCGTGGTGGA TCGGATCGAC CTCGACAGCC AGATCACTGG CACGTTCACC
GGGGCGGACA TTCCCAATCT GGAAAAGGCG GACAGCCGCG AGAAGCTGCA GCTGCTGCTG
GCGCAGGACG TGCGCAAGAT CATCATCACC ACGATCTTCA AATTCGGTGA GGCCACGGGC
AGTCTGAACG ACCGCAGCAA CATCATCGCT CTGGTCGACG AGGCCCACCG CACCCAGGAA
GGTGATCTGG GCCGCAAGAT GCGTGAAGCC CTGCCTAACG CGTTTCTGTT CGGCCTGACC
GGCACGCCGA TCAACCGCGC AGACCGCAAC ACCTTCTACG CCTTTGGTGC CGAGGAGGAC
GAAAAGGGTT ACATGAGCCG TTATGGCTTC GAGGAATCGA TCCGCGACGG CGCCACACTG
AAGCTGCACT TCGAGCCCCG GCTGATTGAC TTGCACATCG ACAAGGCGGC ACTGGATGCC
GCGTACAAAG ATCTGACCGG CGGCCTGTCG GATCTGGACA AGGACAACCT CGCCAAGACC
GCCGCCAAGA TGGCCGTGCT GGTCAAGACG CCCGAGCGTA TCCGCAAGGT TTGCGAGGAC
ATCGTCGAGC ATTTTCAGAC CAAGGTGGAG CCCAACGGCT TTAAAGGGCA GATCGTCACC
TTCGACAGGG AGTCCTGCCT GCTGTTCAAG GCCGAGCTGG ACAAGCTACT GCCGCCCGAG
GCCACAGACA TCGTCATGTC GGTGCAGGCG GGAGACAAGA AGGAACACCC AGAGTACGCG
CCCTATGACC GTTCACGCGA TGAGGAAGAA CGGCTGCTAG ATCGCTTCCG CGACCCGGCC
GACCCTCTGA AGCTGATCAT CGTCACGGCC AAGCTTCTTA CCGGCTTCGA TGCGCCGATC
TTGCAGGCCA TGTACCTGGA CAAGCCGCTG CGTGACCACA CGCTGCTGCA GGCCATCTGC
CGCGTCAACC GTACCTATTC CGAGCAGAAG ACTCATGGCC TGATCGTGGA CTACCTAGGC
ATCTTTGATG ACGTGGCAGC AGCGCTGGAA TTTGACGACC AGAGCGTCAA GCAGGTGGTC
AGCAACATCC AGGAGCTGAA GGACAAGTTG CCAGATGCCA TGCAGAAATG CCTGGCGTTC
TTCACCGGGT GTGACCGCAC CTTGCAGGGC TATGAAGGCC TGATCGCTGC GCAGCAGTGC
CTGCCCAACA ACGAGGTGCG AGACAACTTC GCCGCCGAGT ACAGCGTGCT CAACAAGATA
TGGGAGGCTC TGTCACCGGA CACCGTACTG GGCCCCTTCG AGAAGGATTA CAAGTGGTTG
TCACAGGTGT ACCAGTCGGT GCAGCCGTCC AGTGGCCACG GCAAACTGAT CTGGCATTCG
CTGGGCGCCA AGACCATTGA ACTGATCCAC CAGAACGTGC ATGTCGACGC CGTGCGGGAT
GACCTCGACA CTTTGGTGCT GGACGCCGAT CTGCTGGAGG CAGTGCTCTC GAACCCCGAT
CCGAAAAAGG CCAAGGAAAT CGAGATCAAG CTGAACCGAC GTCTGGCCAA GCACACCGGC
AATCCTAAGT TCAAGCAGCT TTCCGAGCGA CTGGATGCTT TGAAGGACCG CTTCGAGGCA
GGCCAGATCA ACAGCGTGGA GTTTTTGAAG GAGCTGCTGC AGATCGCCAA GGAGGCACTG
CAGGCCGAGA GGGAAGTTCC ACCCGAAGAG GACGAGGATC GCGGAAAGGC AGCCTTGACT
GAGCTATTCA ACGAGGTCAA GACGGCCGAA ACGCCGATCT TGGTCGAACG CGTGGTTGCG
GACATCGACG AGATCGTGCG CCTGGTGCGC TTCCCCGGCT GGCAAGGCAC GCAAGCCGGC
GAGCGGGAAG TAAAGAAGGC GCTACGAAAG GCCCTCTTCA AGTACAAGCT GCACGCTGAT
GAGGATCTCT TCGAAAAGGC GTACAGCTAC ATCCGGCAGT ACTACTAA
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| Protein sequence | MFNEANTVEA YVRDLLVGPI KAVPANTVQE PQGSYGPSPK GIGWRYTAPA DVPRQIQEVL
VEPWLRDALI RLNPEIASQP DRADEVLYKL RAIVLSVRSD GLIRANEEMT AWMRGERSMP
FGHNNEHVPV RLIDLDDLSQ NHYIVTQQYT YRAGPTERRA DLVLLVNGLP LVLIEAKTPV
KKCISWVDGA VQVHDDYEKF VPELFVCNVF SVATEGKAYH YGSIGLPVKD WGPWHLDGDG
HDGQHHPLKS LKLSTESMLR PHVVLDVLGS FTLFATNKKK QRIKIICRYQ QFEAANKIVE
RVLAGYPRKG LIWHFQGSGK SLLMVFAAQK LRMHAGLKNP TVLIVVDRID LDSQITGTFT
GADIPNLEKA DSREKLQLLL AQDVRKIIIT TIFKFGEATG SLNDRSNIIA LVDEAHRTQE
GDLGRKMREA LPNAFLFGLT GTPINRADRN TFYAFGAEED EKGYMSRYGF EESIRDGATL
KLHFEPRLID LHIDKAALDA AYKDLTGGLS DLDKDNLAKT AAKMAVLVKT PERIRKVCED
IVEHFQTKVE PNGFKGQIVT FDRESCLLFK AELDKLLPPE ATDIVMSVQA GDKKEHPEYA
PYDRSRDEEE RLLDRFRDPA DPLKLIIVTA KLLTGFDAPI LQAMYLDKPL RDHTLLQAIC
RVNRTYSEQK THGLIVDYLG IFDDVAAALE FDDQSVKQVV SNIQELKDKL PDAMQKCLAF
FTGCDRTLQG YEGLIAAQQC LPNNEVRDNF AAEYSVLNKI WEALSPDTVL GPFEKDYKWL
SQVYQSVQPS SGHGKLIWHS LGAKTIELIH QNVHVDAVRD DLDTLVLDAD LLEAVLSNPD
PKKAKEIEIK LNRRLAKHTG NPKFKQLSER LDALKDRFEA GQINSVEFLK ELLQIAKEAL
QAEREVPPEE DEDRGKAALT ELFNEVKTAE TPILVERVVA DIDEIVRLVR FPGWQGTQAG
EREVKKALRK ALFKYKLHAD EDLFEKAYSY IRQYY
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