Gene Rpic_3122 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3122 
Symbol 
ID6288386 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3270465 
End bp3271211 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content65% 
IMG OID642626698 
Productphosphoglycolate phosphatase 
Protein accessionYP_001900677 
Protein GI187930190 
COG category[R] General function prediction only 
COG ID[COG0546] Predicted phosphatases 
TIGRFAM ID[TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.571446 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.270174 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGACGG GCGTGCTACC CGCCGGCCCC GTCCGCGCTG TCATCATCGA CCTAGACGGG 
ACGATGGTCG ACACGGCGGG CGACTTCCAC GCCGCCATCA ATGCGATGCT GGGGGCGCTT
GGCGCCGCGC CGGACATGCC AGCCGAGGAA GTGGTCAGTT ACGTCGGCAA AGGCTCGGAA
AACCTCGTGC GGCGCGCGCT TGATGCACGC TTGCCGCCCG CCCAGGCCAA CAGCCGCTTT
GCGGAGGGGC TGGAGTTGTA CCAGCGCGCC TACATCGCCA TCAACGGACA GCACGTGAAC
GTCTATGACG GCGTGCGCGA AGGGCTGGCT GCACTGCGCG ACATGGGCAT CGCTCTCGCG
TGCGTGACGA ATAAGCCACG CGATTTCACG CAGCCGCTCC TGGCGCAGCT CGGCCTGAAC
ACGTATTTCG ACCTCGTCTA CCCGGGCGAC GCCTTCCAGT ATCGCAAGCC CGATCCGTAC
CCCATGCTGC GGGTGGCGGA GGCGTTTGGC GTGGCCCCGG TTGAAATCGT GGCCATTGGC
GACTCGGAAA ACGACGCCCG CGCGGCCCGT GCCGCCGGCA TGCGCGTGCT GGCGGTACCG
TATGGCTATA ACCACGGCCA GCCTATACAG GGCGCCGGGG CCGATGCTAT AGTCGACACA
CTTTTTGCGG CAGCCGAGTT GATCCGGCCC TATGCGGAGC CACACAACGC CGTCTCTGCC
GCTTCAACTG ACGATCCATG TTCCTGA
 
Protein sequence
MMTGVLPAGP VRAVIIDLDG TMVDTAGDFH AAINAMLGAL GAAPDMPAEE VVSYVGKGSE 
NLVRRALDAR LPPAQANSRF AEGLELYQRA YIAINGQHVN VYDGVREGLA ALRDMGIALA
CVTNKPRDFT QPLLAQLGLN TYFDLVYPGD AFQYRKPDPY PMLRVAEAFG VAPVEIVAIG
DSENDARAAR AAGMRVLAVP YGYNHGQPIQ GAGADAIVDT LFAAAELIRP YAEPHNAVSA
ASTDDPCS