| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3117 |
|---|
| Symbol | |
|---|
| ID | 6288436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 3266449 |
|---|
| End bp | 3267753 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642626693 |
|---|
| Product | phenylacetate-CoA ligase |
|---|
| Protein accession | YP_001900672 |
|---|
| Protein GI | 187930185 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1541] Coenzyme F390 synthetase |
|---|
| TIGRFAM ID | [TIGR02155] phenylacetate-CoA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0603128 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0548798 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCCCC GCTCGACCGA CCTGCCGCTC GATCCGATCG AGACCGCCAG CCGCGACGCC
ATCCAGGCAC TGCAGCTTGA ACGCCTGAAG CGCAGCCTCG CGCACGCGTA TGAGAACGTG
CCCGCCTATC GGGCGAAGTT CGACGCGGCG GGTGTGCATC CGTCAGATTT GCAGTCGCTT
GCCGATCTGG CGAAGTTTCC GTTCACAACC AAGACCGATC TGCGCGACAA CTATCCGTTC
GGCATGTTTG CGGTGCCGCA GGATCGGATC GCGCGCATCC ACGCGTCGTC GGGTACGACC
GGCAAACCCA CGGTGGTCGG CTACACGCTG GCGGATATCG ATACATGGGC CGGCTTGGTG
GCGCGCTCGA TCCGGGCGGC GGGGGCACGG CGCGGCGACA AGGTCCACGT GAGCTACGGC
TACGGGCTTT TCACCGGCGG CCTGGGCGCG CATTACGGCG TGGAGCGCGC GGGGCTGACG
GCCATCCCGT TTGGCGGTGG GCAAACCGAG CGGCAAGTGC AACTCATCCA CGATTTTCAG
CCGCAAATCA TCATGGTGAC GCCCAGCTAC ATGCTGGCCA TTGCCGACGA GTTCGAACGC
CAAGGCATGG ACCCGGCCGC GTCGAGCCTG CAGATCGGCA TCTTCGGCGC CGAGCCATGG
ACACCCGAAA TGCGCAGCGC CATCGAAGCG CGCATGGGGC TTTCAGCGGT CGATATCTAC
GGCCTGTCGG AGGTGATGGG GCCTGGCGTG GCCAGCGAAT GCGCCGAAAC CAAGGACGGC
CCGACCATCT GGGAAGACCA CTTCTATCCG GAGATCATTG ATCCGGACAC CGGCGAGGTG
CTGCCCGACG GCGAATTCGG CGAACTGGTG TTCACGTCGC TGACCAAGGA AGCGATGCCG
GTGGTGCGCT ATCGCACGCG CGATCTGACG CGCCTATTGC CCGGCACGGC GCGTCCGGGC
TTGCGCCGCA TGGAGAAAAT CACCGGCCGC TGCGACGACA TGATGATCGT GCGCGGTGTG
AACGTGTTCC CATCGCAGAT CGAGGAATTG ATCCTGAAGC ACGCGGCGCT ATCACCGCAC
TATCAATGCG TGCTCGGCAA GGAAGGACCG CTGGATACAC TGACGGTGCG GATCGAGGCG
GCGCTAGGCG CGCCGGCTGA CGCGGCAAAA TCGGCGAGCA GCCACCTGGC GCGCGACATC
AAGTCGTTGA TCGGCGTGAC CGCCGCGATC GAGACACTGG CCAGCGGCGG AATCGAGCGG
TCGGTCGGCA AGGCGCGCCG CGTGGTGGAC TTGCGGCGCA CCTAG
|
|---|
| Protein sequence | MRPRSTDLPL DPIETASRDA IQALQLERLK RSLAHAYENV PAYRAKFDAA GVHPSDLQSL
ADLAKFPFTT KTDLRDNYPF GMFAVPQDRI ARIHASSGTT GKPTVVGYTL ADIDTWAGLV
ARSIRAAGAR RGDKVHVSYG YGLFTGGLGA HYGVERAGLT AIPFGGGQTE RQVQLIHDFQ
PQIIMVTPSY MLAIADEFER QGMDPAASSL QIGIFGAEPW TPEMRSAIEA RMGLSAVDIY
GLSEVMGPGV ASECAETKDG PTIWEDHFYP EIIDPDTGEV LPDGEFGELV FTSLTKEAMP
VVRYRTRDLT RLLPGTARPG LRRMEKITGR CDDMMIVRGV NVFPSQIEEL ILKHAALSPH
YQCVLGKEGP LDTLTVRIEA ALGAPADAAK SASSHLARDI KSLIGVTAAI ETLASGGIER
SVGKARRVVD LRRT
|
|---|
| |