| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3104 |
|---|
| Symbol | |
|---|
| ID | 6289314 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 3242533 |
|---|
| End bp | 3244242 |
|---|
| Gene Length | 1710 bp |
|---|
| Protein Length | 569 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642626675 |
|---|
| Product | Long-chain-fatty-acid--CoA ligase |
|---|
| Protein accession | YP_001900659 |
|---|
| Protein GI | 187930172 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.219632 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAC CGTGGCTGAA GCAGTACCCC GCCGGGGTGC CGGCCGAGAT CGATGCATCG
CAGTATCGAT CGCTGGCCCA CCTGCTTGAG GATTCTTTCC AAAAGAACCG CAACCGCCGT
GCGTTTGAAT GCATGGGCAA GGTACTGACC TATGGCGAGC TCGATACGCT GTCGCGCCAA
CTGGCGGCGT GGCTGCAATC GCGCGGTCTG GCGCCCGGCG CCCGCGTTGC GCTGATGATG
CCGAACGTGC TGCAGTACCC GGTGGCGCTG GCCGCCGTGC TGCGTGCAGG CTATGTAGTC
GTCAACGTCA ATCCGCTCTA CACCCCGCGC GAGCTTGAGC ATCAACTCAA GGACAGCGGC
GCCGAAGCCA TCATCATCCT GGAGAACTTC GCGACGACGC TGCAGCAGGT GCTGCCCAAT
ACGCCGGTCA AGCACATCGT GGTGGCCAGC ATGGGCGACA TGCTCGGCGG CCTTAAGGGC
ATGCTGGTGA ATTTTGTCGT GCGCAGCGTC AAGAAGATGG TGCCGGCGTG GGAGCTTCCC
AGTTGCATCC GCTTCAATAC GGCGCTGCAA GAGGGCGCCA AGCAGACGCT CAAGCCCACC
TCGGTCGGCC CCGACGACGT GGCCTTCCTG CAATACACGG GCGGCACGAC GGGCGTGTCG
AAGGGCGCGA CGCTGCTGCA TCGAAATATC GTCGCCAACG TGCTCCAATC GGAAGCGTGG
ATGAACCCGG CGCTCACCAA GCCCGGCCGC GACGGCCGCA TGCTGGCTGC CGACGAAGAG
ATCGTCACCA TCACCGCGCT GCCGCTGTAT CACATCTTCG CGCTGACGGT GTGCTGCCTG
CTGTCGATGC GCAAGGGCGG GCTGGCCGTG CTGATCCCGA ACCCGCGTGA CATTCCGGGC
TTCATCAAGG TGCTCAAGCA GTACCGCTTC CACATGTTCC CGGCCGTGAA CACGCTGTAC
AACGCGCTGC TGAACAACCC GGAATTCAAG GATGTCGACT GCTCCAACCT GCGCGTGGCC
AACGGTGGCG GCATGGCGGT GCAGGAAGCC GTGGCCAAGA AGTGGCTCGA GGTGACGGGG
TGCCCGATCA TCGAGGGCTA TGGCCTGTCT GAAACCTCGC CGTCGGCCAT CTGCAACCCG
ACCGATACCG ACAAGTTTTC GGGCACCGTC GGCCTGCCGA TTCCGGGCAC TGAAATCGCC
ATTCGCGACG ACGAAGGCCG CGATCAGCCG ATCGGCCAGC CGGGCGAAAT CTGCATCCGC
GGCCCGCAGG TCATGGCTGG TTACTGGAAG CGCCCGGACG AGACCGCCAA GGTCATGTAT
GCCGACGGCT TCTTCAAGAC CGGCGACGTG GGCGTAATGG ACGAGCGCGG TTACACCAAG
ATTGTCGATC GTAAGAAGGA CATGATCCTG GTGTCGGGCT TCAACGTGTA CCCGAACGAG
ATCGAAGGCG TCGTGGCGAT GTGCCCGGGC GTGCTGGAAG TGGCTGCCGT GGGCGTGCCC
GACGTCCACT CGGGCGAGGT GGTGAAGCTG TTCGTGGTGC GCCGCGACCC GACACTCACG
GAACAGAAGC TGCAGGAGTT CTGCAAGGAC CAGCTCACCG GTTACAAACG CCCCAAGTTC
ATCGAGTTCC GCAACGAGCT GCCGAAGACC AACGTCGGCA AGATCCTGCG CCGCGAACTG
CGCGATGAGG CGATGAAGAA GCGTGCCTGA
|
|---|
| Protein sequence | MDKPWLKQYP AGVPAEIDAS QYRSLAHLLE DSFQKNRNRR AFECMGKVLT YGELDTLSRQ
LAAWLQSRGL APGARVALMM PNVLQYPVAL AAVLRAGYVV VNVNPLYTPR ELEHQLKDSG
AEAIIILENF ATTLQQVLPN TPVKHIVVAS MGDMLGGLKG MLVNFVVRSV KKMVPAWELP
SCIRFNTALQ EGAKQTLKPT SVGPDDVAFL QYTGGTTGVS KGATLLHRNI VANVLQSEAW
MNPALTKPGR DGRMLAADEE IVTITALPLY HIFALTVCCL LSMRKGGLAV LIPNPRDIPG
FIKVLKQYRF HMFPAVNTLY NALLNNPEFK DVDCSNLRVA NGGGMAVQEA VAKKWLEVTG
CPIIEGYGLS ETSPSAICNP TDTDKFSGTV GLPIPGTEIA IRDDEGRDQP IGQPGEICIR
GPQVMAGYWK RPDETAKVMY ADGFFKTGDV GVMDERGYTK IVDRKKDMIL VSGFNVYPNE
IEGVVAMCPG VLEVAAVGVP DVHSGEVVKL FVVRRDPTLT EQKLQEFCKD QLTGYKRPKF
IEFRNELPKT NVGKILRREL RDEAMKKRA
|
|---|
| |