Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_3091 |
Symbol | murD |
ID | 6286066 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 3227910 |
End bp | 3229550 |
Gene Length | 1641 bp |
Protein Length | 546 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 642626662 |
Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
Protein accession | YP_001900646 |
Protein GI | 187930159 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 49 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGACA TGACCGACGA CTCCATCACC CCGGACGACG ATATGGCCGC CACGCAGCCC GACGCCGCCG TGGACGCCGT TGTCGCGACA CTCGATTCGG CCGAGCCGAT GCCCGCCGCT GAAACCGCAC AGGCGCCGCG CATGTTCGGC GAGTTCGAAG CGCCGGTGGT GCTTGTGCTC GGCCTCGGCG AATCCGGCCT CGCCATGGCA CGCTGGTGTG CCCGTCATGG CGCGCCCGTG CGCGTGGCCG ACACGCGCGA GGCACCGGCC AACCTGCCGG TGCTGCGCGC CCATGTGCCG GACGCGGAGT TTGTGACCGG TCCCTTTGCC GTGTCGCTGC TGGACGGTGT GACGTTGGTG GCGATCAGCC CTGGCTTGTC GCCGCTGGAT CCGAACGTCG CGGCGCTGCT GAACGCCGCC AATGCGCAGA GCGTGCCGGT GTGGGGCGAG ATCGAATTGT TTGCCCGCGC GCTGGCCGGC CTCAAGGCCG CGCAAGGCTA TGCGCCGCGC GTGCTCGCCA TCACGGGCAC GAACGGGAAG ACCACCACCA CGGCGCTCAC GGGCGCCCTG GTCCAGCGCG CCGGCAAGAC GGTCGGCGTG GCCGGCAACA TCAGCCCGTC GGCGCTGGAC AAGCTGAGCG AATGCGTCGA CGCAGGCACG CTGCCTGACG TGTGGGTGCT CGAGCTTTCC AGCTTCCAGC TCGAAACCAC GCATTCGCTG GAAGCCGATG CGGCCACCGT ACTGAACATC ACGCAGGATC ACCTCGACTG GCACGGCACC ATGGAGGCCT ACGCCGCAGC GAAGGGCCGC ATCTTCGGTG CCAACACCGT GCGCGTGCTG AACCGTCAGG ACGCGGCCGT GATGGCATTC GCGAGCAAGA ACGGCGGCGA TATCACCTTC GGCATCGATG AGCCGGGCAC GCCCGATGCG CTCGGCCTGC TGCGCGATGG CGGCATGCCC TGGATCGTAT TGGCCGAAGT CGAAGAGGAC GATCTGCCCA AGCCTACGCG CCGCAAGAAG GGCGACGCCG CGCCGGCCGC GCCGGTGCCG GTGCGCCTCA AGCGTCTGAT GCCGGCCGAC GCACTGCGCA TCCGTGGCTT GCACAACGCG ACCAACGCGA TGGCTGCGCT GGCACTGTGT CGCGCGATCG GCCTGCCAGT GAGCGCGCTG CTGCACGGCC TGCGCGACTA CGCCGGCGAG CCGCACCGCG TCGAACTGAT CGCCGCGTTT GACGACATCG AATTCTTCGA CGACAGCAAG GGCACCAACG TCGGCGCGAC GGTGGCTGCA CTCTCGGGCC TGTCCAAGCA TGTCGTGCTG ATCGCCGGTG GCGATGGCAA GGGTCAGGAC TTTTCGCCGC TGGCCGAGCC GGTCGCGCAG TACGCGCGCG CCGTGATCCT CATCGGTCGC GATGCACCGC TGATTCGTGA GGCGCTGGCC AATACCGGTG TCGCGCTGGT CGACGCGCCG ACGCTGGAAG CCGCCGTGCT GGAAGCCGCC GCGCATGCGC AGCCGGGCGA CGCCGTGCTG TTGTCGCCGG CGTGCGCAAG CTTCGACATG TTCCGCAACT ACGAACACCG CGCCCAGGTG TTCCACGAGG CCGTGGTCGC ATTGGCGGCA GACCGAGGAG TCCTCCTATG A
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Protein sequence | MTDMTDDSIT PDDDMAATQP DAAVDAVVAT LDSAEPMPAA ETAQAPRMFG EFEAPVVLVL GLGESGLAMA RWCARHGAPV RVADTREAPA NLPVLRAHVP DAEFVTGPFA VSLLDGVTLV AISPGLSPLD PNVAALLNAA NAQSVPVWGE IELFARALAG LKAAQGYAPR VLAITGTNGK TTTTALTGAL VQRAGKTVGV AGNISPSALD KLSECVDAGT LPDVWVLELS SFQLETTHSL EADAATVLNI TQDHLDWHGT MEAYAAAKGR IFGANTVRVL NRQDAAVMAF ASKNGGDITF GIDEPGTPDA LGLLRDGGMP WIVLAEVEED DLPKPTRRKK GDAAPAAPVP VRLKRLMPAD ALRIRGLHNA TNAMAALALC RAIGLPVSAL LHGLRDYAGE PHRVELIAAF DDIEFFDDSK GTNVGATVAA LSGLSKHVVL IAGGDGKGQD FSPLAEPVAQ YARAVILIGR DAPLIREALA NTGVALVDAP TLEAAVLEAA AHAQPGDAVL LSPACASFDM FRNYEHRAQV FHEAVVALAA DRGVLL
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