Gene Rpic_3091 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3091 
SymbolmurD 
ID6286066 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3227910 
End bp3229550 
Gene Length1641 bp 
Protein Length546 aa 
Translation table11 
GC content69% 
IMG OID642626662 
ProductUDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 
Protein accessionYP_001900646 
Protein GI187930159 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase 
TIGRFAM ID[TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones49 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGACA TGACCGACGA CTCCATCACC CCGGACGACG ATATGGCCGC CACGCAGCCC 
GACGCCGCCG TGGACGCCGT TGTCGCGACA CTCGATTCGG CCGAGCCGAT GCCCGCCGCT
GAAACCGCAC AGGCGCCGCG CATGTTCGGC GAGTTCGAAG CGCCGGTGGT GCTTGTGCTC
GGCCTCGGCG AATCCGGCCT CGCCATGGCA CGCTGGTGTG CCCGTCATGG CGCGCCCGTG
CGCGTGGCCG ACACGCGCGA GGCACCGGCC AACCTGCCGG TGCTGCGCGC CCATGTGCCG
GACGCGGAGT TTGTGACCGG TCCCTTTGCC GTGTCGCTGC TGGACGGTGT GACGTTGGTG
GCGATCAGCC CTGGCTTGTC GCCGCTGGAT CCGAACGTCG CGGCGCTGCT GAACGCCGCC
AATGCGCAGA GCGTGCCGGT GTGGGGCGAG ATCGAATTGT TTGCCCGCGC GCTGGCCGGC
CTCAAGGCCG CGCAAGGCTA TGCGCCGCGC GTGCTCGCCA TCACGGGCAC GAACGGGAAG
ACCACCACCA CGGCGCTCAC GGGCGCCCTG GTCCAGCGCG CCGGCAAGAC GGTCGGCGTG
GCCGGCAACA TCAGCCCGTC GGCGCTGGAC AAGCTGAGCG AATGCGTCGA CGCAGGCACG
CTGCCTGACG TGTGGGTGCT CGAGCTTTCC AGCTTCCAGC TCGAAACCAC GCATTCGCTG
GAAGCCGATG CGGCCACCGT ACTGAACATC ACGCAGGATC ACCTCGACTG GCACGGCACC
ATGGAGGCCT ACGCCGCAGC GAAGGGCCGC ATCTTCGGTG CCAACACCGT GCGCGTGCTG
AACCGTCAGG ACGCGGCCGT GATGGCATTC GCGAGCAAGA ACGGCGGCGA TATCACCTTC
GGCATCGATG AGCCGGGCAC GCCCGATGCG CTCGGCCTGC TGCGCGATGG CGGCATGCCC
TGGATCGTAT TGGCCGAAGT CGAAGAGGAC GATCTGCCCA AGCCTACGCG CCGCAAGAAG
GGCGACGCCG CGCCGGCCGC GCCGGTGCCG GTGCGCCTCA AGCGTCTGAT GCCGGCCGAC
GCACTGCGCA TCCGTGGCTT GCACAACGCG ACCAACGCGA TGGCTGCGCT GGCACTGTGT
CGCGCGATCG GCCTGCCAGT GAGCGCGCTG CTGCACGGCC TGCGCGACTA CGCCGGCGAG
CCGCACCGCG TCGAACTGAT CGCCGCGTTT GACGACATCG AATTCTTCGA CGACAGCAAG
GGCACCAACG TCGGCGCGAC GGTGGCTGCA CTCTCGGGCC TGTCCAAGCA TGTCGTGCTG
ATCGCCGGTG GCGATGGCAA GGGTCAGGAC TTTTCGCCGC TGGCCGAGCC GGTCGCGCAG
TACGCGCGCG CCGTGATCCT CATCGGTCGC GATGCACCGC TGATTCGTGA GGCGCTGGCC
AATACCGGTG TCGCGCTGGT CGACGCGCCG ACGCTGGAAG CCGCCGTGCT GGAAGCCGCC
GCGCATGCGC AGCCGGGCGA CGCCGTGCTG TTGTCGCCGG CGTGCGCAAG CTTCGACATG
TTCCGCAACT ACGAACACCG CGCCCAGGTG TTCCACGAGG CCGTGGTCGC ATTGGCGGCA
GACCGAGGAG TCCTCCTATG A
 
Protein sequence
MTDMTDDSIT PDDDMAATQP DAAVDAVVAT LDSAEPMPAA ETAQAPRMFG EFEAPVVLVL 
GLGESGLAMA RWCARHGAPV RVADTREAPA NLPVLRAHVP DAEFVTGPFA VSLLDGVTLV
AISPGLSPLD PNVAALLNAA NAQSVPVWGE IELFARALAG LKAAQGYAPR VLAITGTNGK
TTTTALTGAL VQRAGKTVGV AGNISPSALD KLSECVDAGT LPDVWVLELS SFQLETTHSL
EADAATVLNI TQDHLDWHGT MEAYAAAKGR IFGANTVRVL NRQDAAVMAF ASKNGGDITF
GIDEPGTPDA LGLLRDGGMP WIVLAEVEED DLPKPTRRKK GDAAPAAPVP VRLKRLMPAD
ALRIRGLHNA TNAMAALALC RAIGLPVSAL LHGLRDYAGE PHRVELIAAF DDIEFFDDSK
GTNVGATVAA LSGLSKHVVL IAGGDGKGQD FSPLAEPVAQ YARAVILIGR DAPLIREALA
NTGVALVDAP TLEAAVLEAA AHAQPGDAVL LSPACASFDM FRNYEHRAQV FHEAVVALAA
DRGVLL