| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3087 |
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| Symbol | ddl |
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| ID | 6286114 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 3223118 |
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| End bp | 3224113 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642626658 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_001900642 |
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| Protein GI | 187930155 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.807087 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACGACCG GTCCGTTTGT TCCCAATCCG ACGATTGATC CGAAGTCCCT CGGCAAAGTG
GGCGTGCTCA TGGGCGGTCG TTCGGCCGAG CGCGAAATCT CACTGATGTC CGGCAACGGC
GTGCTGGCTG CGCTGCGCGC ACGCGGTGTC GATGCACACG CCTTCGACCC GGGCCTGCAG
GCCGTGGCCG ATCTGGCCAA GCAAGGGTTC GACCGCGTGG TGATTTCGCT GCACGGCCGC
TTTGGCGAAG ACGGCACGAT CCAGGGCCTG CTCGAGCAAT TCGGTATTCC GTACACCGGC
AGCGGCGTAC TCGCATCTGC GCTGGCGATG GACAAGGAAG CCACCAAGCG CCAATGGCAG
ACCCATGGCC TGCCCACGCC CGATTTCGTG ATGCTGCACG CCGGCGCCGA CTGGCAAGCC
GTGGCCGACC GCCTGGGCCT GCCGCTGATC GTCAAGCCGG CGCGCGAAGG TTCGTCGATC
GGTCTGACCA AGGTCACGAG CGTCGCCGAG CTGCCCGCCG CCTACGAAAA GGCCGCGCGC
CTGGATCGTG ATGTGATGGC CGAGCAGTTC ATCGAAGGTG ACGAACTGAC CTGCCCGATC
ATCGGCGAAG GGGAGAGCGC TACGGCATTG CCGCTTATCC GCATCGTCGC GCCGCAGGCC
AACTACGACT ACCAGAACAA GTACTTCACC GACGACACGC GCTACGAATG CCCGGCACCG
ATTCCCGCTG ATGTGGCCGC GCGCGTGCAG GCGCTGGTGG TGCAGGCATA TCGCGGGCTG
GGCTGCCGTG GCTGGGGCCG CGCCGACATC ATGCTGCGCA AGTCCGATAA CGCGCCGTTC
CTGCTGGAGA TGAACACGTC GCCGGGCATG ACCGGCCATT CGTTGGTGCC GATGGGCGCC
CGCGCGGCCG GCATCAGCTA TGAAGATTTC GTATTGCAAC TGGCGGCGAG TGCGTCGCTG
GAGTTGCACG CGAGCACCGA CTGGAAACCC GAGTAA
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| Protein sequence | MTTGPFVPNP TIDPKSLGKV GVLMGGRSAE REISLMSGNG VLAALRARGV DAHAFDPGLQ
AVADLAKQGF DRVVISLHGR FGEDGTIQGL LEQFGIPYTG SGVLASALAM DKEATKRQWQ
THGLPTPDFV MLHAGADWQA VADRLGLPLI VKPAREGSSI GLTKVTSVAE LPAAYEKAAR
LDRDVMAEQF IEGDELTCPI IGEGESATAL PLIRIVAPQA NYDYQNKYFT DDTRYECPAP
IPADVAARVQ ALVVQAYRGL GCRGWGRADI MLRKSDNAPF LLEMNTSPGM TGHSLVPMGA
RAAGISYEDF VLQLAASASL ELHASTDWKP E
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