| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3040 |
|---|
| Symbol | |
|---|
| ID | 6286097 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 3167753 |
|---|
| End bp | 3168865 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 642626610 |
|---|
| Product | putative hemagglutinin-related transmembrane protein |
|---|
| Protein accession | YP_001900595 |
|---|
| Protein GI | 187930108 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.697137 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTC AGAACCCGCT CCACACTTCT TCTTCCACTT CGTTGTCCGC CGCTTCGGCG
TCGCGCACGC TGCTGGCAGC GGCTGCAGTG GCCGTGCTGA CGCTGGCCGG TTGTGCTTCG
GGCGGCAACC CGAACGGCGA TACGACGCCG TCATCGTCGG CCAACAACAA TCCGGGCGCG
GTGCCGGTCG GCAACGTTGC CAGCGGCGGC GGCAACGTCG TCACGCAGAC GGGCAAGACC
GTCAGCGACC TTGGCACGAC GATCGGCACG GCGTCGGTAC CCGTTATCGG CGGCACGGCG
GCGCAGAAGG ATCTGGGAGC GACGGTCACC TCCGCCGGCA ACACGGTCCA GACGTTGGGC
GCCGGTATCA GCAACGGGCT GGGCAAGATC GGCTCGACGC CCGACCCGGT CGGTACCACG
GTGCAGAGTT CGGGTGATGT GATCCGCTCC GCCGGCGTGA CGGTCGGCAA CGCGGGGCAG
ACCGTCTCGG ATCTGGGTGC CGCCGGCAGC CCGCTGGCGC CGCTGAATCC GGTGACGTCG
CCGGTGGGCA GCGGTGTGTC TGCGCTGGGT CAGGTGATGC AGGGTGCCGG CGGGCTCGTC
ACGATTGGCA CGTCGAGCGG CCCGGTGCAG CAGATCACGC AGCAGACCAG CAACGCGATC
GTGCCGTTGT CGTCGCAGGT CGCGCAGGGC ACGCAGGCGG TCGGCAGCAC GACGATGCTC
GGCGGGCCGC TGGCCGGTGC GCTAAACACG GTTGGCGGTG GCCTTCAGAG CGCTGGCGCG
CAAGTCGGCG CGGCCGGCGG CAACCCGCTC ACGCGTGACG TGGGCGGTGT GGTCGGCGCC
GCTGGCGGCA CGGTGGCCAG CGCCGGCGGA TTGATCAACG GCGGCAGCGG CGGCTCGGCG
AATCCGTTGG CACCGATCAC GGGCGCGCTC GGTGGCGGCC TCGGCGGCGG CAGCAATCCG
CTGGCTCCGG TAACGAGCGC ACTGACCGGC GCTGCCGGCA GCGGCAACCC GCTCGCCCCA
ATCACGAATG CGCTGGGTGG CGTCACGAAC GCCGCCGGCG GCTCCGGCAG CAATCCGCTG
TCACCCCTGA CCGGTGCGTT GAGCGCGCAT TGA
|
|---|
| Protein sequence | MKIQNPLHTS SSTSLSAASA SRTLLAAAAV AVLTLAGCAS GGNPNGDTTP SSSANNNPGA
VPVGNVASGG GNVVTQTGKT VSDLGTTIGT ASVPVIGGTA AQKDLGATVT SAGNTVQTLG
AGISNGLGKI GSTPDPVGTT VQSSGDVIRS AGVTVGNAGQ TVSDLGAAGS PLAPLNPVTS
PVGSGVSALG QVMQGAGGLV TIGTSSGPVQ QITQQTSNAI VPLSSQVAQG TQAVGSTTML
GGPLAGALNT VGGGLQSAGA QVGAAGGNPL TRDVGGVVGA AGGTVASAGG LINGGSGGSA
NPLAPITGAL GGGLGGGSNP LAPVTSALTG AAGSGNPLAP ITNALGGVTN AAGGSGSNPL
SPLTGALSAH
|
|---|
| |