Gene Rpic_3002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3002 
Symbol 
ID6288834 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3129512 
End bp3130261 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content68% 
IMG OID642626572 
Productprotein of unknown function DUF558 
Protein accessionYP_001900557 
Protein GI187930070 
COG category[S] Function unknown 
COG ID[COG1385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00046] RNA methyltransferase, RsmE family 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGGCTTC CCCGTTTTTT CGTCGACACG CCGCTGGCCC CCAACACCAC CGTCACGCTG 
GACGAGTCCG TCACACGCCA CATCCACGTG CTGCGCCTGG CCGCTGGCGA TGACATCTGC
CTGTTCGATG GCTCCGGCTA CGAATTTCGT GCACGGCTCG ACGCCATCAA CAAGCGCGAC
GCCACCGCCA GCCTTGTCGA CGCCACGCAG CCCGACACCG AGGCGCGCTA CGCCATCACG
CTCGCGCAAG GCATTGCCGG CGGCGACAAG ATGGATTGGC TGATCGAGAA GGCCGTCGAA
CTGGGCGTCA ATGCCGTCGC GCCGCTGCAG ACCGAACGCG GCGTGGTGCG ACTCTCCGGC
GAGCGTGCCG TCAAGCGCGT GCAGCACTGG CAGGCATTGG TGCAAGCGGC CTGCGAGCAG
TGCGGCAGAG CCCGCGTGCC GGTGGTCGCA CCCGTCGCCA CGCTGCGCGA ATGGCTTGCC
ACCGCCAAGT CCACCGACGC GCCGCGCGTG TTGCTGTCAC CGCGCGGCGC GCAATCGCTC
ACGCAGTGGG CCGTGCAATC GCGCACGCGC ATCGTAGGCA GCGGCATCGT GCTGCTGATC
GGCCCCGAAG GCGGGCTTTC GCCCGACGAG GAAGCACTTG CCGAGGCCGC CGGTTTCTTA
CCACTGACAC TTGGACGACG TATTCTGAGA ACGGAATCGG CGGCGCTTGT GGCCGTCTCC
GCGCTGCACG CCGTGCTCGG CGAGTTCTAG
 
Protein sequence
MGLPRFFVDT PLAPNTTVTL DESVTRHIHV LRLAAGDDIC LFDGSGYEFR ARLDAINKRD 
ATASLVDATQ PDTEARYAIT LAQGIAGGDK MDWLIEKAVE LGVNAVAPLQ TERGVVRLSG
ERAVKRVQHW QALVQAACEQ CGRARVPVVA PVATLREWLA TAKSTDAPRV LLSPRGAQSL
TQWAVQSRTR IVGSGIVLLI GPEGGLSPDE EALAEAAGFL PLTLGRRILR TESAALVAVS
ALHAVLGEF