| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_2916 |
|---|
| Symbol | |
|---|
| ID | 6286436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 3029936 |
|---|
| End bp | 3030373 |
|---|
| Gene Length | 438 bp |
|---|
| Protein Length | 145 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642626486 |
|---|
| Product | putative type 4 fimbrial biogenesis transmembrane protein |
|---|
| Protein accession | YP_001900471 |
|---|
| Protein GI | 187929984 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4968] Tfp pilus assembly protein PilE |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCAAGCA AGCCGAGGTG TCAGCGCGCG CGGGCGGCGC GGGGCTTTAC GCTGATTGAG
CTCATGATCA CAGTGGCCAT TGTCGGCATC CTGGCGATCA TTGCGTATCC CAGCTACGTC
CAGTACATCG TCCGCTCCAA TCGGGCAGCG GCGGAATCCT TCATGCAGGA AGTGGCGGCC
GCGCAGGAGC GCTTCCTGCT CGACAATCGC GCCTATGCGC CTGACCTGAC AACGCTGCAA
TACGCCAGCA ACGTCCCGGC GAACGTTTCA CCCAACTACA CCTTCACGCT GAGCGCCAGC
AGCGTGCCGC CGTCTTACCA ACTGGCGGCG ACTCCGCAGG GCTCGCAACA GGCGAACGAC
GCCGCCTGCG GCACACTCAC GCTGACCAAC ACCGGTGCCA AGGTGGCGTC CACAGGCGCC
TCCAACTGCT GGAAGTGA
|
|---|
| Protein sequence | MASKPRCQRA RAARGFTLIE LMITVAIVGI LAIIAYPSYV QYIVRSNRAA AESFMQEVAA
AQERFLLDNR AYAPDLTTLQ YASNVPANVS PNYTFTLSAS SVPPSYQLAA TPQGSQQAND
AACGTLTLTN TGAKVASTGA SNCWK
|
|---|
| |