| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_2911 |
|---|
| Symbol | |
|---|
| ID | 6288270 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 3023989 |
|---|
| End bp | 3027225 |
|---|
| Gene Length | 3237 bp |
|---|
| Protein Length | 1078 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642626481 |
|---|
| Product | putative type 4 fimbrial biogenesis PilY1-related protein signal peptide |
|---|
| Protein accession | YP_001900466 |
|---|
| Protein GI | 187929979 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTCCT TTGCCCAACG ACTTGCCTTT GCCGCGACGG CAACTTTTGC ACTCGCGCTG
TCAGGCGCTC AACTTGCCAG TGCCGAAGAC ATTGATCTGT ACACGGGGCT GCAGCAGAAC
GCCGGCAAGC CCAACGTTGT GATCATCTTT GACGATGGCT CTAACTCAGA CGCCAACGCG
ACGTTCACCT GCTCGGCGAC TGGGCTGACT GTGGCCAACC CAACAAAGAG CTCCGGCGCT
GAGCAGTGTG CCCTCTACGG CGCCGCACAG TCGATTGCGA GCAATCCGTC TTTGCTGGGC
AACGTCAATC TGGGTCTGAT GTTGTTTGAC CCCAAGAGCC CCGGCGGATT GTTCACGTTC
CCTTCTGCGA ATCCCAGGTC GGCGCAGACG CTGCAATTGA TGGACAACAA CGGCGTCAAC
AGCCTGCTGT CGTACATCCA AAACCAGTTC GCTACGGACC TGACCGGCGG CAACAATGTG
CAGACAGCCG GCGCCATGCA GGAAGCCTGG GCGTTCTACG CGGGTTACCA GAACACCAAG
GTGGCGGGCC TGTCTGGCAC GCAGTACACA TCGCCCATCA GTAACCCTTG CCAACGAAAT
TTCGTCATCT ACATTGGCAA CGCGACCAAC AGCGGCCACC CTGCCGAGAG CGATCCGAAG
ATGCTGGCGG CGCTTCAAGC GGCCGTGCCC ACGCCCACGG CTGCACAGAC GACGCAAATC
GCGATCAATA GCAAGTACGC GTCGAACTGG GGTGACGAGT GGTCGCGCTA TATGTACCAG
AGCGACCTGC AAGGCACGGC CAACACGGCC AACCCGCAGA ACGTCATCAC CTACGCCATC
ACGGTGACGG ACGGCAAGAA TCAGGACTAC GTCAACTTCG ATAACAGCAT GGCCACCAAT
GGTGGCGGCA AGGCCTACAC CGTTCAGCTT GGCGATGTGG CGGGCCTTCA GGATGCGCTG
CTGTCGATCC TCAATGAAAT CCAGGCGGTC AACAGTGTGT TCGCATCGGT CAGCTTGCCG
GCTGCCGTGA ACGCGCAAGG CCAGTTCCTG AACCAGGTGT ACATCGGGAT GTTTCGCCCC
GATGCGACGG CAGCCCCGCG CTGGATGGGC AACCTCAAGC AGTACCAGGT GGGCTTCGAC
ACCAACGGTA ACCTGCAGTT GCTGGATTCA GTCGGCAAGG CCGCGCTGAG CAATGCGGGC
ACGGGGTTCA TGTCGCCCAG CGCCATCAGC TTCTGGACCG CCGACCCGCC GCTGTCCTTT
GGCTCAAGCG GTTATGGCAG CAGCATCAGC AATTGGCCGA CCAAGGGTTT CTGGCAAAAC
AGCCCGTCCA GCAAGGGTTG GGCCTTTGAC TCACCCGACG GTGAGATCGT CGAAAAAGGC
GGCGCTGGTG AAATGCTGCG CGCATTATTC CTGACCAGCC AGGGCAGCCG CACGCTGCTT
ACCTGCAACG GCAAGGGCAC TTGCCCGACC AGCACGGCTA TGCCAACGTT CGACACGGCC
AACACATGGC TGACCGGCAC CAGCGGGCTC AACGCCATCA ACTCGTACAA CAGCACGAAC
GGCGCGCCCA CCATCGCGTC GAGCGAGCAG ACCAACTTCA TCAACTGGGT GCGCGGCCGC
GATGTTCAGG CGCTGGACAA TTCGACGGTC GCGGGGCAGG AAGCCGAAAC TGGCCCGGGC
TCGCCCGTGA CGATCCGCCC GTCCATCCAC GGTGATGTGC TGCATTCCCG GCCGGTGGTC
ATCAACTACG GAGGCAGCAC CGGCATCGTG GTGTTCTATG GCGCCAATGA TGGCGTCTTC
CATGCCATTA ATGGCAATCA GACGACGGGT ATCAACGGGG TGCGACCTGG CGGCGAGCTG
TGGGGCTTCA TCCCGCCCGA GTTCATTGGC AAGCTGAGTC GGCTCTATGC CAACTCGCCA
CAGGTGAAGC TGTCCACTAC GCCGAACGGC ATTACGCCGA CACCGACGAT GCGTGATGAC
TTTTTCGACG GCAGTACGAC CGTCATGCAA GACCAGCGCG TTTCGGGAAG CGCCCGCACC
ATCATCTACT TGACCGCACG GCGTGGCGGT AGCTTGATTT ACGCCCTGGA GGTAACCGAC
CCCGCCAACC CGCGCTATCT CTGGTCGCGC AGCAACACCG ATATTCCGGA GCTGGGTCAG
ACGTGGTCCA AGCCGAGACT GATGCGCGTG GCCGGTTACG CCAACCCTGT ACTGATCATG
GGCGCCGGCT ACGATGCGTC TTCCGAAGAC AGCGACCCCG CACCCGGCAC CGATACCATG
GGTCGAGGCA TCATTGTGCT CGATGCCTAC AGCGGCGCGC CGGTCTGGAG CGCCTTGCCG
AACTGCGCTG GCATGGCGGG CGTGTGTGTG AAGAACACCG GCCTGACCCG TTCGATTGCC
TCGGATGTCA CTACGGTCGA TCGCACAGGT AGCGGTTACA TCCAGATGGC CTACGTGGGC
GACGTTGGTG GCAACATCTG GCGGGTGGAC TTCCAAAGCT CCGCTGGCAA CGCCCCCGCC
AACTGGGCAC TGACGCAGTT CGCGTCGCTC GGCGGCGCTG CCAACACCAA CAACGCGCGC
AAGTTCTTCT ATGCGCCCGA TGTCGTGCCC ACCGCCGGTT TCAACGCCGT CATTGCCGGC
ACCGGCGATC GCGAGCACCC GCTATATTCG GCTTCTACAA CGCCGGGCAC CGCCTACAAC
GTGGTCAACC GCTTCTATAT GTTGAAAGAC CCGAATCTTG GCCCCGTGCC GGCTGGTTGG
GTGCCATTGA CGGAAGCCAA CCTCGTAGAT TCGACTTCGA CGGCGTACAG CGGGACGGGC
TCAGGCTTCT ACATCACGCT GCCGAATCCG GGCGAGAAGG TCGTGAACGC CCCCCTCACG
GTGGCTGGCT ACACCACGTT CGGGACCAAC ACCCCGGCGG TTCCGTCCGC CGGCGCGTGC
TACCCGAACT TGGGCATCGC CCGCACGTAT TCGGTGAGCT TCCTGACAGG CACTGGCCAG
AACCCGAATC GCTCGGTGGT GCTGGACGGT GGCGGGTTCC CGCCCTCGTC GGTCTATGGC
GTGGTGCTGG TGAACAACGG CAGTGGCGGT ACGACGCCGG TGCCGGTGTG CTTCGGGTGT
GGCAACCAGA CGGGAACGGG CGCAGGCGGC TCCGCGCTGG CGCCCGTCCA GGTGACACCT
AAAGGCCTTG GCAAACGCAA GCGCACATTC TGGTTCTCCG AAACCGACAA GCACTGA
|
|---|
| Protein sequence | MRSFAQRLAF AATATFALAL SGAQLASAED IDLYTGLQQN AGKPNVVIIF DDGSNSDANA
TFTCSATGLT VANPTKSSGA EQCALYGAAQ SIASNPSLLG NVNLGLMLFD PKSPGGLFTF
PSANPRSAQT LQLMDNNGVN SLLSYIQNQF ATDLTGGNNV QTAGAMQEAW AFYAGYQNTK
VAGLSGTQYT SPISNPCQRN FVIYIGNATN SGHPAESDPK MLAALQAAVP TPTAAQTTQI
AINSKYASNW GDEWSRYMYQ SDLQGTANTA NPQNVITYAI TVTDGKNQDY VNFDNSMATN
GGGKAYTVQL GDVAGLQDAL LSILNEIQAV NSVFASVSLP AAVNAQGQFL NQVYIGMFRP
DATAAPRWMG NLKQYQVGFD TNGNLQLLDS VGKAALSNAG TGFMSPSAIS FWTADPPLSF
GSSGYGSSIS NWPTKGFWQN SPSSKGWAFD SPDGEIVEKG GAGEMLRALF LTSQGSRTLL
TCNGKGTCPT STAMPTFDTA NTWLTGTSGL NAINSYNSTN GAPTIASSEQ TNFINWVRGR
DVQALDNSTV AGQEAETGPG SPVTIRPSIH GDVLHSRPVV INYGGSTGIV VFYGANDGVF
HAINGNQTTG INGVRPGGEL WGFIPPEFIG KLSRLYANSP QVKLSTTPNG ITPTPTMRDD
FFDGSTTVMQ DQRVSGSART IIYLTARRGG SLIYALEVTD PANPRYLWSR SNTDIPELGQ
TWSKPRLMRV AGYANPVLIM GAGYDASSED SDPAPGTDTM GRGIIVLDAY SGAPVWSALP
NCAGMAGVCV KNTGLTRSIA SDVTTVDRTG SGYIQMAYVG DVGGNIWRVD FQSSAGNAPA
NWALTQFASL GGAANTNNAR KFFYAPDVVP TAGFNAVIAG TGDREHPLYS ASTTPGTAYN
VVNRFYMLKD PNLGPVPAGW VPLTEANLVD STSTAYSGTG SGFYITLPNP GEKVVNAPLT
VAGYTTFGTN TPAVPSAGAC YPNLGIARTY SVSFLTGTGQ NPNRSVVLDG GGFPPSSVYG
VVLVNNGSGG TTPVPVCFGC GNQTGTGAGG SALAPVQVTP KGLGKRKRTF WFSETDKH
|
|---|
| |