| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_2676 |
|---|
| Symbol | |
|---|
| ID | 6287151 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 2788302 |
|---|
| End bp | 2789975 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642626248 |
|---|
| Product | dihydroxy-acid dehydratase |
|---|
| Protein accession | YP_001900234 |
|---|
| Protein GI | 187929747 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
|---|
| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.531561 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGACA ACAAGCGTTC CCAGCACATC ACTCAGGGCG TGGCGCGCTC GCCCAACCGC
TCGATGTACT ACGCGCTGGG CTACACAAAA GACGACTTCA ACAATCCGAT GATCGGTGTG
GCCAACGGCC ATTCGACCAT CACGCCATGC AACTCGGGCC TGCAGAAGCT GGCCGATGCC
GCCGTGGCTG CAATAAAGGA CGCCCGCGCG AATCCGCAGA TCTTCGGCAC GCCCACCATT
TCCGATGGCA TGTCGATGGG CACGGAAGGC ATGAAGTTCT CGCTGATCTC GCGCGAAGTG
ATTGCCGACT GCATCGAGAC CTGCGTCAAC GGCCAATGGA TGGACGGTGT GGTCGTCATC
GGCGGCTGCG ACAAGAACAT GCCGGGCGGC ATGATCGCCC TGGCGCGCAC GAATGTGCCG
GGCATCTACG TGTACGGCGG CACCATCAAG CCGGGGCACT GGAAGGGCAA GGACCTGACC
ATCGTCTCGT CGTTCGAGGC CGTGGGCGAA TTCACCGCCG GCCGCATGAG CGAGGAAGAC
TTCGAGGGCA TCGAAAAAAA CGCCTGCCCG TCGAGCGGTT CGTGCGGCGG CATGTACACG
GCCAACACGA TGAGTTCGTC GTTTGAAGCG CTAGGCATGT CGTTGCTGTA TTCATCGACG
ATGGCCAATC CCGATCAGGA GAAGGTCGAC AGCGCCGCCG AATCCGCTCG CGTGTTGGTT
GATGCCGTGC GCCGCGACCT GAAGCCGCGC GACATCATCA CGCGCAAGTC CATCGAGAAC
GCTGTCGCCG TCATCATGGC AACCGGTGGC TCGACCAACG CCGTGCTGCA CTACCTGGCC
ATCGCTCACG CTGCGGAAGT GGAATGGACG ATCGACGACT TCGAGCGGGT GCGCCAGCGC
GTGCCCGTCA TCTGCAACCT CAAGCCGTCG GGCCAGTACG TGGCCACCGA CCTGCACGAG
GCCGGCGGCA TCCCGCAGGT GATGAAGCTG CTGCTCAACG CCGGCCTGCT GCATGGCGAT
TGCATCACCA TCACCGGCAA GACGCTGGCG GAAGAACTCG CCCACGTGCC CGACCAGCCG
CGCGCTGATC AGAACGTGAT CCTGCCGATT GACAAGGCGC TCTACAAGGA AGGCCACCTC
GCCATCCTGA AGGGCAATCT GGCCGAAGAA GGCGCCGTGG CGAAGATCAC CGGGCTGAAG
AATCCCGTCA TCACCGGCCC GGCCCGCGTG TTCGAGGACG AGCAAAGTGC GATGAGCGCG
ATCCTGGGCG ACCAGATCAA GGCCGGCGAT ATTCTGGTGC TGCGCTATCT GGGGCCGAAG
GGCGGCCCCG GCATGCCGGA GATGCTGGCC CCGACCTCGG CCATCATCGG CAAGGGCCTG
GGCGAGTCAG TCGGCTTCAT TACCGACGGA CGCTTCTCGG GCGGTACGTG GGGCATGGTG
GTCGGCCACG TCGCACCGGA AGCCTACGTG GGAGGCACGA TTGGATTGGT GCACGAAGGG
GATTCGATCA CCATCGACGC GCACCAGCGG CTGCTGCAAT TGAACGTGCC GGACGACGAG
CTTGCCCGCC GCCGCGCCGC GTGGAAGCAA CCTGCGCCGC GCTATACGCG TGGCGTGCTG
GCGAAGTTTG CAAAACTGGC AGCAACGGCC AGCAAGGGTG CGGTAACGGA CTGA
|
|---|
| Protein sequence | MPDNKRSQHI TQGVARSPNR SMYYALGYTK DDFNNPMIGV ANGHSTITPC NSGLQKLADA
AVAAIKDARA NPQIFGTPTI SDGMSMGTEG MKFSLISREV IADCIETCVN GQWMDGVVVI
GGCDKNMPGG MIALARTNVP GIYVYGGTIK PGHWKGKDLT IVSSFEAVGE FTAGRMSEED
FEGIEKNACP SSGSCGGMYT ANTMSSSFEA LGMSLLYSST MANPDQEKVD SAAESARVLV
DAVRRDLKPR DIITRKSIEN AVAVIMATGG STNAVLHYLA IAHAAEVEWT IDDFERVRQR
VPVICNLKPS GQYVATDLHE AGGIPQVMKL LLNAGLLHGD CITITGKTLA EELAHVPDQP
RADQNVILPI DKALYKEGHL AILKGNLAEE GAVAKITGLK NPVITGPARV FEDEQSAMSA
ILGDQIKAGD ILVLRYLGPK GGPGMPEMLA PTSAIIGKGL GESVGFITDG RFSGGTWGMV
VGHVAPEAYV GGTIGLVHEG DSITIDAHQR LLQLNVPDDE LARRRAAWKQ PAPRYTRGVL
AKFAKLAATA SKGAVTD
|
|---|
| |