Gene Rpic_2651 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_2651 
Symbol 
ID6288811 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp2765825 
End bp2766529 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content66% 
IMG OID642626222 
Productconjugal transfer protein TrbF 
Protein accessionYP_001900209 
Protein GI187929722 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3701] Type IV secretory pathway, TrbF components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0552472 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.84636 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGATTCA AACGACCGCA GGTGCGCTAC GCCGACACGC CGCAGCCTGC CACCCCGTAC 
CAATCCGCCG CGCAAGTCTG GGACGAGCGC ATCGGCTCGG CCCGCGTGCA GGCTAGAAAC
TGGCGTTTCA TGGCCTTTGG CTGCCTCACC TTGGCCGTGC TGATGGCCGG TGGTCTGGTC
TGGCGCTCCG CGCAATCCAT CGTCACGCCC TACGTCATCG AGGTGGATAA CGCGGGCCAG
GTGCGCGCGG TCGGCGAGGC CGCCACGCCG TACCGGCCCA GCGATGCGCA GATCGCCTAC
CACCTGGGCC GCTTCATCGG CCTGGTGCGC AGCCTGTCCA TCGACCCCAT CGTGGTGCGG
CAGAACTGGC TCGATGCCTA CGACTACACG ACCGACAAGG GCGCTGTTGT GCTCAACGAG
TACGCCCGCG TGAACGATCC GTTCGCGCGC ATCGGCAAGG AGTCAGTGAC GGTGCAGATC
ACCAGCGTGA CCCGCGCCAG TGACACGTCT TTCAACGTGC GCTGGACGGA GACGCGCTTC
GTCAATGGCG CGCTGGATCG CACCGAACGC TGGAACGCCG TGGTTTCCAT CGTGCAGCAG
ACGCCGCGCA CCGAGCAGCG CCTGCGCAAG AACCCCCTGG GCATCTACGT CAACGGCCTG
TCGTGGAGCC GCGAACTGGA AGGAAACGAA GGAGCAAAAC CATGA
 
Protein sequence
MRFKRPQVRY ADTPQPATPY QSAAQVWDER IGSARVQARN WRFMAFGCLT LAVLMAGGLV 
WRSAQSIVTP YVIEVDNAGQ VRAVGEAATP YRPSDAQIAY HLGRFIGLVR SLSIDPIVVR
QNWLDAYDYT TDKGAVVLNE YARVNDPFAR IGKESVTVQI TSVTRASDTS FNVRWTETRF
VNGALDRTER WNAVVSIVQQ TPRTEQRLRK NPLGIYVNGL SWSRELEGNE GAKP