| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_2648 |
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| Symbol | |
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| ID | 6287950 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 2761212 |
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| End bp | 2763689 |
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| Gene Length | 2478 bp |
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| Protein Length | 825 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642626219 |
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| Product | conjugal transfer ATPase TrbE |
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| Protein accession | YP_001900206 |
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| Protein GI | 187929719 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.947837 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.965174 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAACC TTGCCGAATA CCGCCAGCGC CCGGCCTTGC TGGCTGACTG GCTGCCTTGG
GCCGGGCTGA TCGCTCCGGG CGTCGTGCTG AATAAGGATG GCTCCTTCCA GCGCACGGCG
CGCTTTCGGG GGCCAGACCT CGACAGTGCC ACGCAGGGCG AGCTGATCTC TACGTCAGCA
CGGTTGAACA ACGCGCTGCG CAGGCTGGGT TCGGGCTGGG CCTTGTTCAT CGAAGCCGAG
CGCCGGCCCG CCGCCAACTA CCCGCACTCG GAGTTTCCCG AGCCGCTGTC GTGGCTGGTG
GACGAGGAGC GACGGGCCGC CTTTGAGGAC TTGGGCAATC ACTTCGAGAG CGGCTACCAC
CTCACGCTGG TGTACCTGCC GCCCGAGGAG GCCCGTGCCC GTGCCGCGGG CCTGCTGTAC
GAGAACCGGC TGACCGAAGG CGTCGATTGG CGCGAGCGCC TGACTGCCTT CATCGCGGAG
ACGGAACGCA TCTTTGACCT GCTCGACGGC GTGATGCCGG AGATCGCCTG GCTCGACGAT
AGCCAGACGC TGACCTACCT GCACGCCACC GTGTCTACAC GGCGTTACCG CGTGGGCGTG
CCCGAGGTGC CATTCCACCT CGATGCGCTG CTGGCCGACG CGCCGCTGAT CGGTGGCTTG
GCGCCGATGC TGGGCGACCA GCACCTGCGC GTGGTGTCGG TGCGCGGTTT TCCGATCTCG
ACTTGGCCGG GGATTCTGGA CGACCTCAAC CGTCTGGGCT TCGCGTATCG CTGGAGTACG
CGCTTTCTCT GCCTGGACAA AGCCGAGGCG GAAAAAGAAC TCGCCCGCCT GCGCCGTCAG
TGGTTCGCCA AACGCAAGAA CGTCATCGCG CTGCTGCGCG AGACGATCTT CCAGCAGGAA
AGCCCGCTGG TCGATACCGA CGCCAGCAAC AAGGCCACCG ATGCCGATGC CGCCTTGCAG
GAGCTGGGCA GCGATCAAGT GGCCTTCGGC TACGTGACAG CGACCGTCAC CGTCATGGAC
GCGGATGCCG CCGTGGCCAA CGAGAAGCTG CGCAGGGTGG AGCGCGTCAT CCAGGGGCGT
GGCTTCGTCA CCATCCCCGA AACGCTCAAC GCCGTGGATG CGTGGCTGTC GTCCATTCCG
GGCCATGCCT ACGCCAACGT CCGCCAGCCC ATCGTCTCCA CGTTGAACCT GGCGCACCTG
ATGCCGGTGT CGGCGGTATG GGCCGGGCCG GAGAAGAACG CGCACCTCGA CGGCCCGCCG
CTGATCGTCA CGCGCACTGA GGGCGCGACG CCGTTCCGGC TGGTGACGCA CATCGGCGAC
GTGGGCCACA CGCTGGTGGC TGGCCCTACG GGCATGGGCA AGTCGGTGCT GCTCGCCACC
TTGGCGATGC AGTTTCGGCG CTATCGCGGC TCGCGCATCT TTGCCTTCGA CATGGGGCGC
TCGATGCGCG CCACCATCCT CGGGCTGGGT GGTGAGCACT ACGACCTCGG GATGGATGGC
GAGATCGCGT TTCAGCCTCT CGCCCGCATC GACCGCGAGG GCTACCGCAC CTGGGCCGCC
GAATGGATCG AAGGGCGCTT GCGGCATGAG AGCGTGGCCG TCGGCCCCGA AGAGAAGGCC
GCTATCTGGT CGGCGCTCGG CAGTCTCGCC GGTGCGCCGA TGGAACAGCG CACGATGACG
GGCCTGTCGG TACTGCTGCA ATCGAATGCG CTGCGCCAGG CGCTTGCGCC GTACGTGCTG
GGCGGCGCCC ACGGCAAGCT GCTGGATGCG GATTCGGATC GCCTGGGCGC TGGCTCCGTG
CAGTGCTTCG AGATGGAGGA ATTGATGCAC AGCAAGGCCG CCGTCATGGC CGTGCTGCAC
TACCTCTTTG CGCGCTTCGA TGAGCGCTTT GACGGTGCGC CCACGCTGCT GATCCTCGAT
GAAGCCTGGC TGTTCCTCGA TGACCCGGTG TTTGCCGCGC GCATTCGCCA GTGGCTCAAG
ACGTTGCGCA AGAAGAACGT GTCGGTCATC TTCGCCACGC AGAGCCTGGC CGACATCAAG
GATTCGAGCA TCGCGCCCGC GATCATCGAA AGCTGCGCGA GCCGCATCTT CCTGCCGAAC
CCGCAGGCGA CCGAGCCGCA GATTCGCACG ATCTACGAAG GCTTTGGGCT GAACTTGCGC
CAGATCGAGA TCGTCGCCAC CGCGCAGCCC AAGCGCGACT ACTACTACCA ATCCCGCCTC
GGCAATCGCC TGTTCGACCT CGACCTGGGA CCGGCGACGC TGGCCTTCGC GGGCGCATCC
ACGGCGCAGG ACCAGCGCGA CATCGACGCG GTGCTCGCTG CCGCCAGCAC CTCCACACCT
TCCGCTTCCA CCCCGTTCGC AGCCGCATGG CTGCGCCACC GCAGCCTCGA TTGGGCGGCC
GATCTGCTGC GCGATTTCCC CGGCCCCGCG CCGGGTGCCG CCCCCATCCC CAGCCATTCC
CAGGAGAACC TGCCATGA
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| Protein sequence | MLNLAEYRQR PALLADWLPW AGLIAPGVVL NKDGSFQRTA RFRGPDLDSA TQGELISTSA
RLNNALRRLG SGWALFIEAE RRPAANYPHS EFPEPLSWLV DEERRAAFED LGNHFESGYH
LTLVYLPPEE ARARAAGLLY ENRLTEGVDW RERLTAFIAE TERIFDLLDG VMPEIAWLDD
SQTLTYLHAT VSTRRYRVGV PEVPFHLDAL LADAPLIGGL APMLGDQHLR VVSVRGFPIS
TWPGILDDLN RLGFAYRWST RFLCLDKAEA EKELARLRRQ WFAKRKNVIA LLRETIFQQE
SPLVDTDASN KATDADAALQ ELGSDQVAFG YVTATVTVMD ADAAVANEKL RRVERVIQGR
GFVTIPETLN AVDAWLSSIP GHAYANVRQP IVSTLNLAHL MPVSAVWAGP EKNAHLDGPP
LIVTRTEGAT PFRLVTHIGD VGHTLVAGPT GMGKSVLLAT LAMQFRRYRG SRIFAFDMGR
SMRATILGLG GEHYDLGMDG EIAFQPLARI DREGYRTWAA EWIEGRLRHE SVAVGPEEKA
AIWSALGSLA GAPMEQRTMT GLSVLLQSNA LRQALAPYVL GGAHGKLLDA DSDRLGAGSV
QCFEMEELMH SKAAVMAVLH YLFARFDERF DGAPTLLILD EAWLFLDDPV FAARIRQWLK
TLRKKNVSVI FATQSLADIK DSSIAPAIIE SCASRIFLPN PQATEPQIRT IYEGFGLNLR
QIEIVATAQP KRDYYYQSRL GNRLFDLDLG PATLAFAGAS TAQDQRDIDA VLAAASTSTP
SASTPFAAAW LRHRSLDWAA DLLRDFPGPA PGAAPIPSHS QENLP
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