Gene Rpic_2534 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_2534 
Symbol 
ID6287672 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp2645805 
End bp2647373 
Gene Length1569 bp 
Protein Length522 aa 
Translation table11 
GC content59% 
IMG OID642626106 
ProductGluconate 2-dehydrogenase (acceptor) 
Protein accessionYP_001900094 
Protein GI187929607 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2303] Choline dehydrogenase and related flavoproteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAACGT TTGATTTCAG CGATGACTCG GTCGTCGTGA TCATCGGTTC TGGTGCCGGC 
GGCGGCACGC TGGCCAACGA GCTGTGCCAG AAAGGCATCA AGGTCGTCGT GCTGGAAGCG
GGCGGCAAGC AGTCGAATGC CAGCTTCATC AATGATGAAT GGAAGGCCTT CAGCCAACTG
GCTTGGCTCG ACAAGCGCAC GACCTCCGGA AGCTGGCGCA TTGCCAAGGA TTTTGCGGAA
CTCCCTGCCT GGATCTGCAA GACGGTTGGA GGTACAAGCA CGCACTGGGC CGGCGCTTCT
CTGCGCTTCC AGGAGCATGA ATTTCAAGCC CGGACGCTCT ACGGCGACCT CAAGGGAGCG
AATCTGCTGG ATTGGCCTCT CACGCTCAAG GAGCTGGAGC CGTATTACGC CAAGGCCGAA
GACAAGATGG GCGTCACGCG CACCAATGGC ATCCCGGGCC TGCCGGGCAA CAACAACTTC
AAGGTGATGT ACAACGGCGC CACCCGGCTC GGCTATAAGG AAGTGCACAC CGGCAACATG
GCCATCAACA GCAAGCCGCG CAAGGGTCGC GCACGCTGCA TGCAGCTCGG CTTCTGCTTC
GAGGGCTGCA AGAGCGGCGC CAAATGGTCG ACGCTGTACA CCGAGTTGCC CGAGGCAGAC
GCTACCGGCA ATTTCGAGTT GCGCACGCAG GCGCATGTCA CCCGCATCGA ACACGATGAC
AAGGGGCGCG TGAATGCCGT CATCTATATG GACAAGGACG GCAAGGAACA GCGGCAAAAG
GCGCGCATCG TCTGCGTGGC GGGGAACTCC ATCGAAACAC CGCGTCTGCT GCTGCTATCC
GCTTCGAACA TGTTCAAGGA CGGTCTGGCC AATTCGTCGG GTCAGGTCGG CCGCAATTAC
ATGCGCCATA TGACCGGGTC GGTTTATGCG GCATTCAAGG AGCCTGTGCA CATGTACCGC
GGCACGACCA TGGCCGGCAT TGTGCGTGAC GAGGCTCGCC ACGATACCCG TCGTGGGTTC
GTCGGCGGTT ACGAACTCGA AACGCTGTCG CTGGGTATTC CGTTCATGGC AGCCTTTCTG
AATCCGGGAG GATGGGGTTC CGACTTCGCG TGGTGGATGG ATCACTATAC GAATTTGGCG
GGTATGTGGC TCGTCGGTGA AGACATGCCG CGTGAGACGA ACCGCGTTAC GCTCAATACG
AACGTCAAGG ATCAATGGGG CAACTACGTG CCGAATGTGC ACTTCGATGA TCACGAAAAC
GACATCGCCA TGCGCAAACA CGCCTACACC CAGGCCGAGC GCATCTACGG TGCAGTCGGT
GCGATCAAGA CGTTCCGCAC GCCGCCGTAT CCGTCGACCC ATAATCTGGG TACCGCCCGC
ATGAGCGCCC GCCCGCAGGA TGGCGTCTGC AATAAATGGG GGCAGACACA TGACATCGCG
AATCTGTTCA TCAGCGACGG CAGCCAGTTC ACCACGGGCG GCTCGGAAAA CCCGACATTG
ACCATCGTTA CGCTCGCTAT CCGGCAGGCT GACTACATTG CCAAGCAGAT GTCGCAACGT
TCGATCTGA
 
Protein sequence
MATFDFSDDS VVVIIGSGAG GGTLANELCQ KGIKVVVLEA GGKQSNASFI NDEWKAFSQL 
AWLDKRTTSG SWRIAKDFAE LPAWICKTVG GTSTHWAGAS LRFQEHEFQA RTLYGDLKGA
NLLDWPLTLK ELEPYYAKAE DKMGVTRTNG IPGLPGNNNF KVMYNGATRL GYKEVHTGNM
AINSKPRKGR ARCMQLGFCF EGCKSGAKWS TLYTELPEAD ATGNFELRTQ AHVTRIEHDD
KGRVNAVIYM DKDGKEQRQK ARIVCVAGNS IETPRLLLLS ASNMFKDGLA NSSGQVGRNY
MRHMTGSVYA AFKEPVHMYR GTTMAGIVRD EARHDTRRGF VGGYELETLS LGIPFMAAFL
NPGGWGSDFA WWMDHYTNLA GMWLVGEDMP RETNRVTLNT NVKDQWGNYV PNVHFDDHEN
DIAMRKHAYT QAERIYGAVG AIKTFRTPPY PSTHNLGTAR MSARPQDGVC NKWGQTHDIA
NLFISDGSQF TTGGSENPTL TIVTLAIRQA DYIAKQMSQR SI