| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_2475 |
|---|
| Symbol | |
|---|
| ID | 6289215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 2588046 |
|---|
| End bp | 2590988 |
|---|
| Gene Length | 2943 bp |
|---|
| Protein Length | 980 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642626051 |
|---|
| Product | TM1410 hypothetical-related protein |
|---|
| Protein accession | YP_001900039 |
|---|
| Protein GI | 187929552 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3868] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01370] possible cysteinyl-tRNA synthetase, Methanococcus type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGGTTC TCAGCCGTTT ACAGCGGCGC ACCGGGGGGA AACGGGGGAA TACGGCAGGG
ACGATCGCAC GGTGGGCTGG GCTTCTTTTG GCCGCCACCG TTTCGATGCC TTGTGTGACG
CTTGCTCAAC AAGCGCCTGC CACCACCGGC TCCGGGGCGT CAGGGGTAAC AGCTTCAGTT
TCGGTCAACG CGCCGAACAT CGCGTGGTTC TACGGCGACA AACCGCCCGT GGCGCAGTTG
CGCGCGTTCG ATGCGGTCGT GGTGGAGCCT GACCACGGGT TCGATCCATC GCAGTTCAAG
ACGCCAAAGA CGCAGTGGTA CGCCTACGTG AGCGTGGGCG AGGTCACGCC CGAGCGCCGC
TGGTACAAGG ATCTGCCCAA GACCTGGCTG CTGGGCCGCA ACGAGGCGTG GGCGTCGCGC
GTGGTGGACC AGACCCAGCC CGAGTGGCCG GCGTTTTATG TCGATCACGT CATCAAGCCG
CTGTGGGACA AGGGCTACCG TGGCTTTTTC CTCGATACGC TCGACTCGTA TCAGTTGGTG
GCCAAGGACG ACGCCTCACG TGCGGCCCAG GAAGCCGGCA TGGTGCGCGT GATTCGCGCC
ATCAAGGCAC GCTATCCGGA GGCCAGGCTG ATCTTCAATC GCGGCTTTGA AATCCTGCCG
CAGGTGCACG ACCTCGCCTA TGCGGTGGCG TTTGAATCGC TGTATCGCGG CTGGGACCAG
GGCAGCAAGC AGTACAAGCA AGTGAACGAT GCGGACCGCG AATGGCTGAT GGGCCATGTA
CGCAAGATTC GCGACGAGTA CCGCCTGCCG GTTATCGCCA TCGACTACTG CCCGCCGACC
GACCGTGCCT GCGCGCGGGA AACGGCCAAG CGCATCAAGG CGCAGGGCGT GGTGCCGTAT
GTGACCGATC CAGACTTGTC GACCATTGGC GTGGGGCGCA TCGAGGTGTT GCCGCGCAAG
GTGTTGATCC TGCAGGACCG CGACCCGCGG ACCACCATTG ACACCAGCGA GGGCGTGCGC
TTTGTGGCCA CGCCGCTCAA TTTTCTTGGC TACGACGTCG AGTACGCCGA CATCAACAAG
CCGCTGCCCG CTGCGGTACC GCCCGACCGC TACGCCGGCG TGGTGGTGTG GGTGAACACC
AGTCCGATCA AGCAGGTGGC AGCGCTATCG TCGTGGGTGC GACAACGTAT TCATGACGGT
GTGCACATCG CCTTCCTGAA CCAGTTCGGC CTGCCGGTGG ACGGCAGCAT GGCCGACATG
TTCAAGCTGC AGCTTGTGCG TGGCCGTGCC ACCGGGCCGC TGTCGGTGGT GTCGCAAGAC
AAGATGATGG GTTTTGAGAT GGCGCCGCAA CCGGAGCGCC GTGAGGCCCA GCCGATTCAG
GTGAGCGCGA ACGGGCAGTC GCTGCTGCGG CTGAAGTCGG GCAACTTTGA GTTTGATGCC
GCTGCCATTA CGGATTGGGG CGGCTACGTA CTGAATCCGT ATGCGGTGTT CTCGATGGAC
ACCGTTGAGC AGGCGCGGTG GGTCGTGCAG CCGATCGAGT TCCTGCGCCG GGCGCTTGCG
CTGCCTGACA TGCCGATCCC CGACGTGACC TCTGAAAACG GCCGCCGGCT CATGCTCGTG
CACGTGGACG GCGACGGCTT TGCCTCGCGC GCCGAGTTTC CCGGCCCCGA ATATTCCGGC
GAGGCGCTGC TGCAGGACGT GTGGGAGAAG TACCGCATCC CCACTACGCT GTCGATCATC
GAAGGCGAGG TGGGCGCAAG CGGCCTTTAC CCCAAGCTGA CGCCGCGCCT GGAAGCGATT
GCGCGCCAGA TGTTCGCGTT GCCGTACGTC GAGCTGGGCA CGCATACCTA CTCGCACCCG
TTTGATTGGA GCCGCACGGT GCCCGGCGCG GCAGGAGATC GGACCAAGGA AGGCCCAGGT
GCGGACAAGG GCGGTGGCGA CACTGCATTC GCCCTGTCCA TTCCGGGCTA CAAGTTCAGT
CTCGACCGCG AGATATCAGG CTCCATCAAC TACATCAACG CGCGCCTGGC ACCGCCTGGC
AAGCGCGTGA AGCTCCTGCA GTGGTCGGGC GACTGCCAGC CCCCCGAGAT TGCCGTGCGC
ATGGCTTGGG ATGCAGGCGT GCTCAACCTG AACGGGGGCG ATACCACCAT CACGCGCAGT
TCGCCATCAT GGACAGAGAT TGCGCCACTG GGCATCGACA AGGGCCCAGG GGCTTACCAA
GTGTTTGCGC CCAACCAGAA CGAGAACGTC TATACAAACG ATTGGACCGG ACCGTTCTAT
GGGTTCGACC GCCTGATTGA AACGCTGCAG TTGACTGACA CGCCCTATCG CTTCAAGCCG
ATCAACATCT ACTACCACAT GTATTCGGGC ACCAAGCTTG CGTCGCTCAA GGCCTTGAAG
AAGGTCTATG ACTACGCGTT GTCGCGGCCC GTGTTCCCGA TCTATTCGAC CGAGTATGTG
GTCAAGGTGC TGGACTTCCG CAACATGGCC ATCGCCAGAG AAGTCGGGGA TGGCAACACT
TGGTTGGTGC GCGGCGATGG CGACCTGCGC GAACTGCGCT GGATGGCCCG CGGCACGCCG
CGCATGGCGG ATGCCCAGGG GGTGGTGGGG TATGACAAGG CAGCGGGCGG TATCTATATC
CATCTCGATG ATGGGGCCGC ACGCTTTACG CTCGCACCTG AAGCAGAATC GTCGAAGCCT
GCATACATTG CAGAAGCCGC AGCCTTCGTG CGCAACTTCG CACGAAACGG CAATGCGTTG
AGTTTCGAGG CGGGTGGCTA CTACAAGCCG TTTGTTCGTC TGGCCAACGC AGGAGCCTGC
CGCGTGAAGG TCAATGGCAA CCCGGCGCGC ACCGCCCGCG CACAAGACAA CACCGTGCGC
GTTGATCTGA CAGGAGCCGC CGCGCAAACC GTGACCTACC AACATATCGA TGTGGTCTGC
TGA
|
|---|
| Protein sequence | MWVLSRLQRR TGGKRGNTAG TIARWAGLLL AATVSMPCVT LAQQAPATTG SGASGVTASV
SVNAPNIAWF YGDKPPVAQL RAFDAVVVEP DHGFDPSQFK TPKTQWYAYV SVGEVTPERR
WYKDLPKTWL LGRNEAWASR VVDQTQPEWP AFYVDHVIKP LWDKGYRGFF LDTLDSYQLV
AKDDASRAAQ EAGMVRVIRA IKARYPEARL IFNRGFEILP QVHDLAYAVA FESLYRGWDQ
GSKQYKQVND ADREWLMGHV RKIRDEYRLP VIAIDYCPPT DRACARETAK RIKAQGVVPY
VTDPDLSTIG VGRIEVLPRK VLILQDRDPR TTIDTSEGVR FVATPLNFLG YDVEYADINK
PLPAAVPPDR YAGVVVWVNT SPIKQVAALS SWVRQRIHDG VHIAFLNQFG LPVDGSMADM
FKLQLVRGRA TGPLSVVSQD KMMGFEMAPQ PERREAQPIQ VSANGQSLLR LKSGNFEFDA
AAITDWGGYV LNPYAVFSMD TVEQARWVVQ PIEFLRRALA LPDMPIPDVT SENGRRLMLV
HVDGDGFASR AEFPGPEYSG EALLQDVWEK YRIPTTLSII EGEVGASGLY PKLTPRLEAI
ARQMFALPYV ELGTHTYSHP FDWSRTVPGA AGDRTKEGPG ADKGGGDTAF ALSIPGYKFS
LDREISGSIN YINARLAPPG KRVKLLQWSG DCQPPEIAVR MAWDAGVLNL NGGDTTITRS
SPSWTEIAPL GIDKGPGAYQ VFAPNQNENV YTNDWTGPFY GFDRLIETLQ LTDTPYRFKP
INIYYHMYSG TKLASLKALK KVYDYALSRP VFPIYSTEYV VKVLDFRNMA IAREVGDGNT
WLVRGDGDLR ELRWMARGTP RMADAQGVVG YDKAAGGIYI HLDDGAARFT LAPEAESSKP
AYIAEAAAFV RNFARNGNAL SFEAGGYYKP FVRLANAGAC RVKVNGNPAR TARAQDNTVR
VDLTGAAAQT VTYQHIDVVC
|
|---|
| |