Gene Rpic_2467 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_2467 
Symbol 
ID6289819 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp2576137 
End bp2577405 
Gene Length1269 bp 
Protein Length422 aa 
Translation table11 
GC content68% 
IMG OID642626045 
ProductD-amino acid dehydrogenase small subunit 
Protein accessionYP_001900033 
Protein GI187929546 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0665] Glycine/D-amino acid oxidases (deaminating) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAATCG CAGTAGTCGG CGCCGGCATC ATCGGCATCA GCACGGCCCA TGCGCTGGCT 
CAGGAAGGCC ATCAGGTCAC CCTGGTCGAG CGCCATCCGG GCCCGGGCGA GGGCACCAGT
TATGCCAACG GCGGCCAGTT GAGCTACAGC TATGTGGCGC CGCTGGCCGG CCCCGGCGTG
CTTTCGCATG TGCCGGGCTG GCTGTTGCGT CGCGATTCGC CGCTGCGGCT GAAGCCATCG
CTGGACCCGG CGTTGCTGCG CTGGGGGCTG CGCTTCATCG CGGCCTGCAA TCGTGACCGT
GCCGACCGCA CCACGCGCGA GCTGCTTGCG CTGTCGTTCT ACAGCCGCGC ACGCATGGAA
GCGTTGCGGG AGGCGTCGCC GGATCTGGCG TTCAGCTTTG CGCGCCGCGG CAAGCTGGTG
GTGCATCGCG AGGCTGCGGC GTTTGAATCG GCCCGCGCGC AGGTCGGCTA TCAGGCGACG
CTCGGCTGCG AGCAGCATGC ATTGTCCGCC GACGAAACGG TGGCCCACGA GCCCGCGCTT
GCCGGCGCGC GTGACCAGAT CGTGGGCGCC ATCTACACGC CCGACGAAGA CGTGGCCGAT
TGTCACCAAC TCTGCGTCGG CCTGTTCAAC CGGTTGCGCG CGATGCCAAA CGTGACGCTG
CGTTTCAATA CCGGCGTAGA TGCGTTGTGG ACCGAAGGCC GCCGCGTGCG CGGTCTCCAT
CTGGCAGATG GCGAGCAGGT TGCCGCCGAT GCGGTGGTGA TGGCAGCGGG CGTGACGAGC
GCCAGGCTGC TCAGCCCATT GCGCATCGAC CCGGGGCTGT ATCCGCTCAA GGGTTACAGC
ATCAGCCTGC CGCTGGAGGA GGGCGATGTT GCCCCGTTGA TCAGCGTGAC GGATGCGGCG
CGCAAGATCG TCTATGCCCG CATTGGGCAG ACGCTGCGTG TGGCGGGCAT GGCGGATCTG
GTGGGCTGGT CAACGGCGCT GGATACGCGC CGCGCCCAGA CGTTGTATGA CGAAACCCGC
GCGCTGTTTC CGGGCGCCAT GCGCGCCAAT GACGCGGGTG CCGATGCGGC GCCGTGGGCT
GGCATGCGGC CTGCAACGCC AACGGGCGTG CCCGTGGTGG GGGCGTCGCC GGTGCAAGGG
TTGTGGCTGA ACGTGGGCCA TGGTGCGCTG GGCTTTACGC TAGCGCTGGG CAGTGCGGGC
TTGCTGGCCG ATCTGATTGC CGGCCGCAAG CCCGCGATTT CCCCAGTGCC CTATGCGCTG
GCCGCGTGA
 
Protein sequence
MQIAVVGAGI IGISTAHALA QEGHQVTLVE RHPGPGEGTS YANGGQLSYS YVAPLAGPGV 
LSHVPGWLLR RDSPLRLKPS LDPALLRWGL RFIAACNRDR ADRTTRELLA LSFYSRARME
ALREASPDLA FSFARRGKLV VHREAAAFES ARAQVGYQAT LGCEQHALSA DETVAHEPAL
AGARDQIVGA IYTPDEDVAD CHQLCVGLFN RLRAMPNVTL RFNTGVDALW TEGRRVRGLH
LADGEQVAAD AVVMAAGVTS ARLLSPLRID PGLYPLKGYS ISLPLEEGDV APLISVTDAA
RKIVYARIGQ TLRVAGMADL VGWSTALDTR RAQTLYDETR ALFPGAMRAN DAGADAAPWA
GMRPATPTGV PVVGASPVQG LWLNVGHGAL GFTLALGSAG LLADLIAGRK PAISPVPYAL
AA