| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_2456 |
|---|
| Symbol | |
|---|
| ID | 6289345 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 2565906 |
|---|
| End bp | 2567267 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642626034 |
|---|
| Product | 3-carboxy-cis,cis-muconate cycloisomerase |
|---|
| Protein accession | YP_001900022 |
|---|
| Protein GI | 187929535 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0015] Adenylosuccinate lyase |
|---|
| TIGRFAM ID | [TIGR02426] 3-carboxy-cis,cis-muconate cycloisomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.786558 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGCG CATTGCTCGA TCGCGCCTTC TCCACGCCGG CCATGCTGGC GGTGTGGTCC
GATGCGGCCA CGGTGCGCGC AATGCTCGAT GTGGAGGCCG CGCTTGCGCA GGCCGAAGGC
GCGGTTGGCG TGATTCCGCC CGAAGCCGTC GCGCCGATTC GCGCGGTGTG CGCCAAGGCG
ACGTTGGATC TGGACGCGCT GGGCAACGCT GCTGCCACCG CAGGCAACCT GGCGATTCCC
CTGGTCAAGC AACTGACTGC GGCCGTCGCA CAGCATGATG AAAACGCCGC GCGCTACGTG
CATTGGGGCG CGACCAGCCA GGACATCATC GATACCGGTC TGATGCTGCA GTGGCGGCTA
TCGGCCGAAC TGATCGAAGC GGATCTGCAG AAGCTGGCTG ACGCGCTCGC GGCACTCGCG
CAACGCCATC GCAATACGCC GATGGTGGCG CGCACGTGGT TGCAGCAGGC GCTGCCGACC
ACGTTCGGCC GCAAGGTTGC GGGTTGGCTG GAAGCGGTGC ATCGCGCGCA GGATCGCTTT
ACCGCGCTGA GCGCGCATGT GCCTGCGTTG CAGTTTGGCG GGGCGGCAGG CACGCTTGCC
AGCCTGGGCG AACACGCACG GGCCGTCGCT CAAACGCTGG CGCACGAGCT TGATCTGCCG
CTGCCGGCGC TCTCGTGGCA CGGCGAGCAG GATCGAATCG CCGAGATCGG CACGACGCTC
GCGTTGCTGA CCGGCACACT GGGCCACTTC GCGCGTGATC TCTCGCTGAT GATGCAGACA
GAGGTGGGCG AGGTTTCCGA GCCTTCCGGT GCAGGCAAGG GTGGTTCTTC CACCATGCCG
CACAAACGCA ACCCGGTCGG GTGCGCGACG GTGCTGGCGG CGGCCACGCG CATGCCTGGC
TTGGCGAGCA CGCTGCTCGC TGCGCTACCG CAGGAGCACG AGCGCGCGCT CGGCGGTTGG
CAGGCGCAGT GGGCGACGTT GCGCGAGATG GCCTGCCTCG CGGCGGGCGC GCTCGATCGC
ATGCGCGACA TCGTTGAAGG TTTGCAGGTC GACGCTGCTC GCATGCGCAC GAATCTGGAC
CTTACGCACG GCCTGATCCT TGGTGAAGCC GTGATGCTGG CGCTGGGTGC GGATCTTGGG
CGTCTGCAAG CGCACCATGT GGTCGAAGCT GCCAGCCGCC AAGCGGTACA AGAGAACAAG
ACGCTGCATG ACGTACTGGC GCAAGACGCA GAGGTCCTTC GCATCTGGGG CGCGACCGCG
CCGCAACGGT TGAGCGCGCT GCTCGATCCC ACCCATTACC TTGGCGATGC GGGCGCCGCT
GTTGACCGCG TGCTCGCAGA ACACGCCCAC CGCCACCCCT GA
|
|---|
| Protein sequence | MTSALLDRAF STPAMLAVWS DAATVRAMLD VEAALAQAEG AVGVIPPEAV APIRAVCAKA
TLDLDALGNA AATAGNLAIP LVKQLTAAVA QHDENAARYV HWGATSQDII DTGLMLQWRL
SAELIEADLQ KLADALAALA QRHRNTPMVA RTWLQQALPT TFGRKVAGWL EAVHRAQDRF
TALSAHVPAL QFGGAAGTLA SLGEHARAVA QTLAHELDLP LPALSWHGEQ DRIAEIGTTL
ALLTGTLGHF ARDLSLMMQT EVGEVSEPSG AGKGGSSTMP HKRNPVGCAT VLAAATRMPG
LASTLLAALP QEHERALGGW QAQWATLREM ACLAAGALDR MRDIVEGLQV DAARMRTNLD
LTHGLILGEA VMLALGADLG RLQAHHVVEA ASRQAVQENK TLHDVLAQDA EVLRIWGATA
PQRLSALLDP THYLGDAGAA VDRVLAEHAH RHP
|
|---|
| |