Gene Rpic_2440 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_2440 
Symbol 
ID6287659 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp2547460 
End bp2549820 
Gene Length2361 bp 
Protein Length786 aa 
Translation table11 
GC content63% 
IMG OID642626018 
ProductUvrD/REP helicase 
Protein accessionYP_001900006 
Protein GI187929519 
COG category[L] Replication, recombination and repair 
COG ID[COG0210] Superfamily I DNA and RNA helicases 
TIGRFAM ID[TIGR01075] DNA helicase II 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.605331 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGACC TGCTCGCCAA TCTGAACCCC GAACAACGCG CTGCCATCAC GCTTCCCGAT 
GAATCGGCGC TGATCCTGGC GGGCGCAGGC AGCGGCAAAA CGCGCGTGTT GACCACCCGC
ATCGCGTGGC TGATCCAAAG CGCGCGGGTG TCGCCGTCGG GTGTGCTGGC CGTCACGTTT
ACGAACAAGG CAGCCAAGGA AATGACGGCC CGCCTGCAGG CCATGCTGCC GATCAACACG
CGCGCCATGT GGATCGGCAC GTTCCACGGT CTGTGCAACC GGTTGCTGCG CGCGCATTAC
CGCGATGCCG GCCTGCCGCA GACGTTCCAG ATTCTGGATA CGCAAGACCA GCTCTCCGCC
GTCAAGCGCC TGCTCAAGTC GCTCAATATC GACGACGAGA AATTCCCGCC CAAGAACGTC
CAGTACTTCA TCAACGGGGC CAAGGAGCAG GGCCTGCGCG CGGGCGATCT GGAAATCGCC
AACGAGTACG ACCGGCGCAT GGCCGATCTC TACGCCGCTT ACGACGCGCA ATGCCAGCGC
GAAGGCGTGG TCGATTTTGC CGAGCTGCTG CTGCGCTGCT ACGAACTGCT GCGCTACAAC
GACGCCATCC GTGCGCACTA CCAACGGCGT TTCAAGCACA TCCTGGTGGA CGAGTTCCAG
GATACGAACA AGCTGCAATA TGCGTGGCTG AAGATTCTGG CCGGCCTGGG CGAGCCCGGC
GTCACGCCCA ACGCCATCTT TGCCGTGGGC GACGATGACC AGAGCATCTA CGCGTTTCGT
GGTGCCAATG TCGGCAACAT GGTCGACTTT GAACGCGAAT TCCGCGTCGA GCACCGGATC
AAGCTGGAGC AGAACTACCG CTCGCATGGC CATATCCTCG ATACCGCCAA CCACCTGATC
TCGCACAACA CGCGTCGGCT GGGCAAGAAC CTGCGCACGG ACGCCGGCCA CGGTGAGCCG
GTGCGCGTCT ATCAGGCCGC GACGGACGGG CAGGAGGCGG GCTGGATTGT CGATGAGATC
CGCGACCGTA TTGCGACCGG CATGTCGCGC TCGGAAATCG CCATCCTGTA TCGCAGCAAC
GCGCAGTCGC GGGTGATCGA ACACGCGCTG TTCTCGGCAG GCATCCCGTA CAAGGTGTAC
GGCGGCCTGC GCTTTTTCGA GCGTGCGGAA ATCAAGCACG CGCTGGCGTA TCTTCAGCTT
CTTGAGAATC CCGACAATGA CGCGGCGTTT GGTCGCGTGG TGAATTTCCC GGCGCGTGGC
GTCGGGGCTC GTTCGCTCGA GCAGTTGCAG GATGCGGCGC GGCTGTATGG CATTTCGCTC
GCAGCGGCGG TGCCGTACCT CACGGGGGCA GCAGGCACCA AGCTGTCGGC GTTTGTGCGT
CTGATCGAAC AGATGCGTGC CGACACGCGC CAGATGACGC TGCCCGAAAT CGTTCAGCAC
GTCATTCACG CCAGCGGGCT GATCACGCAT TACCAGGGTG AAAAGGAAGG CCAGGACCGC
ATCGAGAACT TGCAGGAACT GGTGACAGCC GCCCAAGCTT TCGTTGCTGA AGAAGGCTAC
GGCGTGGATG CGATTGCGAC CGCGCTGCCC GTGCGCCACG ATGCCATGCT GCGCATCGAA
GGCGGCGAGA TCGATACCGC TTCTGAACTC GTCACCGACG AAACGCCTGC AGAGATGACG
CCGCTCGTCG CGTTTCTGAC GCATGCCTCG CTGGAGGCTG GCGACAACCA GGCCCAGGCC
GGCCAGGATG CCGTGCAAAT GATGACCGTG CATGCGGCCA AGGGGCTGGA ATTCCACGTC
GTCTTCATCA CCGGGCTGGA AGAGGGCTTG TTCCCGCACG AAAACAGCCA GATGGAGAAG
GACGGCCTGG AGGAAGAGCG CCGCCTGATG TACGTGGCGA TCACGCGTGC GCGTGAGCGG
TTGTATCTAT CGTTCGCGCA AAGCCGCGTG CTGCACGGGC AGGTCCGCTA CCACATTCGC
TCACGCTTCT TTGACGAACT GCCCGAAGAC ACATTGAAGT GGCTGACGCC GCAGCACTCG
GGCTACCAGG CGACGCGTCG TGTGCAAGGC GATACCGCAT GGGGCAAGGA TTGGTTCAAG
CGCCCAGAGC GTGGCGATGA CGACGCCTAC ACCGGCCGCC CGACCGGCGG CATGGACACC
GGCAAGAACT ACGCCGACGC CAAGCGCGCA GAGGCCACCG GCTTCCGCGT CGGCCAGTCG
GTGTTCCATA ACAAGTTCGG GGAAGGCGTC ATCACGACGC TGGAAGGCGA GGGCGCCGAG
GCGCGCGCCC AGATCAAGTT CAACCGCCAC GGGGTGAAGA CGCTGGCGCT GGGCATCGCC
AAGCTGGACC CGATCAACTG A
 
Protein sequence
MSDLLANLNP EQRAAITLPD ESALILAGAG SGKTRVLTTR IAWLIQSARV SPSGVLAVTF 
TNKAAKEMTA RLQAMLPINT RAMWIGTFHG LCNRLLRAHY RDAGLPQTFQ ILDTQDQLSA
VKRLLKSLNI DDEKFPPKNV QYFINGAKEQ GLRAGDLEIA NEYDRRMADL YAAYDAQCQR
EGVVDFAELL LRCYELLRYN DAIRAHYQRR FKHILVDEFQ DTNKLQYAWL KILAGLGEPG
VTPNAIFAVG DDDQSIYAFR GANVGNMVDF EREFRVEHRI KLEQNYRSHG HILDTANHLI
SHNTRRLGKN LRTDAGHGEP VRVYQAATDG QEAGWIVDEI RDRIATGMSR SEIAILYRSN
AQSRVIEHAL FSAGIPYKVY GGLRFFERAE IKHALAYLQL LENPDNDAAF GRVVNFPARG
VGARSLEQLQ DAARLYGISL AAAVPYLTGA AGTKLSAFVR LIEQMRADTR QMTLPEIVQH
VIHASGLITH YQGEKEGQDR IENLQELVTA AQAFVAEEGY GVDAIATALP VRHDAMLRIE
GGEIDTASEL VTDETPAEMT PLVAFLTHAS LEAGDNQAQA GQDAVQMMTV HAAKGLEFHV
VFITGLEEGL FPHENSQMEK DGLEEERRLM YVAITRARER LYLSFAQSRV LHGQVRYHIR
SRFFDELPED TLKWLTPQHS GYQATRRVQG DTAWGKDWFK RPERGDDDAY TGRPTGGMDT
GKNYADAKRA EATGFRVGQS VFHNKFGEGV ITTLEGEGAE ARAQIKFNRH GVKTLALGIA
KLDPIN