| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_2254 |
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| Symbol | |
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| ID | 6289745 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 2368153 |
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| End bp | 2370741 |
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| Gene Length | 2589 bp |
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| Protein Length | 862 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642625826 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001899820 |
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| Protein GI | 187929333 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCGCAG CAGAACGCAT GTCCAACAAA ATCGGCAACC ACCGCACAGT CAAAGCGAGC
AGCAACGCGA TCCCTGACCT ACTGGGGCAG CCACAGTTGG AATTCGTGCG CGTCTCGGGC
CGCGAAGCGC TGAGCGAGTT GTTCACCTAC ACAGTGGATC TGCGCCCCGT TTCGTTGGCA
GCCGATCAGT CCATGCTCGA ATCAGATCTA GACGCTGCCA TTGGCCACGA GATGACCTTG
TCCATCGAAC TGGACGGCAT GGGCACCGGC CTGCTTGGTG GTGTTGGTGC GGGTGTGCGA
GAAATCACCG GCCTGATCAC CGCCGTCGAA CTGATCGGCG GCGTGGACAA CAATCGTCTC
TACCGCTACA CCTTGCGCCC CTGGTTTTGG TTGGCCAGTC AGACCTCTGA TTACAAAGCG
TTCCAAAACA AGTCTGTCAT CGACATCCTC GACGAAGTGC TGGCCGATTA CCCGTATTCG
GTGGACAAGC GTCTGGACAC CAGTGTCTTC CCCAAGCTCA TCTGGGAAGT CCAGCACGGC
GAGACCGACG CTCACTTCAT CCAACGTCTC ACCGAAGAAT GGGGTATCAG CTATTTCTTC
GAACACGATG GCAGCCACCA CCGGCTCGTG CTCGTCTCCG AATCCGGCGC CTGGCGCAAA
TTCCCCAGCG GGGCATATCA CGCGCTGTCG ATCTACCCGC AAGGTTTCAA GATCGACCAG
GAGCACCTGA CACGTTTCGA GCCCATCAAC CGTCTGCGTA CCGGCAAGGT TACGTTCAAG
GATTACGACC CACGCCAGCC CAAAGCCGAC CTCACCACCA GTGACAGCCT GCCGCGCGAC
ACGCTGTTTT CCGAGTTCGA ACGCTACGAA TACGAACCCG GCCTCTATGA CAGCCGAGAT
GTCGGCAACT TGCACGCTCG CATTCATACG GAAGAGCGGC GCGCCAAGGG GCGACGCATG
CGTGGTGTCG GCAACCTGCG CGGCGTCGCC GCCGGCAACA CCTACCACAT CACCAATCAC
GACCATGACG CGCTGAACCG CGAAGTCCTG ATTGTGAGCA CGGACCTGAT GTTGGAAGAC
GTGGGCATCC ACAGTGGCGG CACCCAGCAA TACACCTGCC GCGTCAGCTT CGAAGCTCAC
CCCACGGACG AAGTCTTCCG TCCAGAACGG ATCGCCCACA AGCGTCGCGT TCAAGGTATC
CAGCGCGCCG TCGTCACCGG TCCCGAGAAC CAAGAGATTT GGACCAACGA CCACGGCTGC
GTCAAAATCC AGTTCGAATG GGACCGCTAC GGCCAGCACG ACGAGAATTC CTCGCCCTGG
ATCCGCGTGT CCAATGGCTG GTCCGGCGAT CAATTCGGCA CCATGCAAAT TCCTCGTATT
GGTCAGGAGG TCCTGGTCGA CTATCTGAAC GGCGATCCGA ACACGCCGAT CATCGTTGGT
CGCGTACCCA ACCAGCTCAA CACACCGCCG TGGGCGCTGC CGACGCAGCA TGCGTTGTCC
GGCATTGCCA GCAAGGAACT CTTCGGGCGG CGGCGTAACC ATCTTCTGAT GGATGACACC
CAAGGGCAGA TTCAGGCCCA ACTGTCGTCA GACCACCAGA CATCCCAGCT CAACCTGGGC
TACTTGACCG GTGTGCCGGG GCAGCCTGGG CGCAAAGACC CGCGTGGCGA AGGTTTTGAT
CTGCGTACTG ATGGGCAGGG CAGTGTGCGA GGCGCCAAGG GCCTGTTCTT TACCGCAGAA
GGGCAAATCG CTGCCGTGGG TGGCCACTTC ACGCGAGAGG AATTCATCCG CTGCATGCGC
GCAGCGCTTG AGACCGCCGA ATCGTTCGGC AACTACAGCA GTCAGCACGA AGCGCTCAAG
AGCGACACCG ATCCGCAATC CAAGCTAACC CAAGCCATCG AGGACTGGGA CGCTGGCGCC
AACAACCATA AGGACGCCCC GGGGCAAGGT GGACAACCCA TCATTGGCGC CTACGCGCCG
GCGGGCATGG CGTTCGCCAC ACCCGAGACG CTGACCAGCT ACGCCGGCAA GCACGTCGAC
ACGATCTCCA AACTCAACCA GCAACACACG GCAGGTCAGC AATACATTGT CAACGCTGGC
ACTGGCATCA GCCAGTTCGC CCACAGTGGT GATTGGAAGG CCACCGCCCA CCAAGGCCAG
CTCGTGCTAC AGGCGCAGAG CAAGAACATG GCGCTCAACG CCAAGACGGA TGTGGTGATT
ACCACCACCG ACGGCACCAT CGTGCTCAAT GGCAAGACCG GTATCACCTT CATGAGTGGC
AATGCCGGCA TCCGCATCGC GGATGGGTGC GTGGATATCT TTGGACCGAC GCGCGTGCAT
GCGCATACCG CCGACTTTGA TGCGCCAGGG CCGCAGGGGA TTGATGGGGC ATTACCGCAG
TTCGACTCAG GGGATACGGG GCGCAAGTTC CGGCTGATTC GTCCCGCAGA CAATGAACCC
GTAGCGAACC GGTCGTATGA AATCGTCAAG AGAGACGGCA GCGTTATCAG GGGAGTCAGT
AACGCCCTGG GAGAAACCGA CCTGCATGAA TCTCAGGCAG CAGACGTGCT GGCAATCAAG
TTTGGCTAA
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| Protein sequence | MGAAERMSNK IGNHRTVKAS SNAIPDLLGQ PQLEFVRVSG REALSELFTY TVDLRPVSLA
ADQSMLESDL DAAIGHEMTL SIELDGMGTG LLGGVGAGVR EITGLITAVE LIGGVDNNRL
YRYTLRPWFW LASQTSDYKA FQNKSVIDIL DEVLADYPYS VDKRLDTSVF PKLIWEVQHG
ETDAHFIQRL TEEWGISYFF EHDGSHHRLV LVSESGAWRK FPSGAYHALS IYPQGFKIDQ
EHLTRFEPIN RLRTGKVTFK DYDPRQPKAD LTTSDSLPRD TLFSEFERYE YEPGLYDSRD
VGNLHARIHT EERRAKGRRM RGVGNLRGVA AGNTYHITNH DHDALNREVL IVSTDLMLED
VGIHSGGTQQ YTCRVSFEAH PTDEVFRPER IAHKRRVQGI QRAVVTGPEN QEIWTNDHGC
VKIQFEWDRY GQHDENSSPW IRVSNGWSGD QFGTMQIPRI GQEVLVDYLN GDPNTPIIVG
RVPNQLNTPP WALPTQHALS GIASKELFGR RRNHLLMDDT QGQIQAQLSS DHQTSQLNLG
YLTGVPGQPG RKDPRGEGFD LRTDGQGSVR GAKGLFFTAE GQIAAVGGHF TREEFIRCMR
AALETAESFG NYSSQHEALK SDTDPQSKLT QAIEDWDAGA NNHKDAPGQG GQPIIGAYAP
AGMAFATPET LTSYAGKHVD TISKLNQQHT AGQQYIVNAG TGISQFAHSG DWKATAHQGQ
LVLQAQSKNM ALNAKTDVVI TTTDGTIVLN GKTGITFMSG NAGIRIADGC VDIFGPTRVH
AHTADFDAPG PQGIDGALPQ FDSGDTGRKF RLIRPADNEP VANRSYEIVK RDGSVIRGVS
NALGETDLHE SQAADVLAIK FG
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