Gene Rpic_2004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_2004 
Symbol 
ID6286841 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp2111888 
End bp2112904 
Gene Length1017 bp 
Protein Length338 aa 
Translation table11 
GC content64% 
IMG OID642625573 
Product1-aminocyclopropane-1-carboxylate deaminase 
Protein accessionYP_001899571 
Protein GI187929084 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2515] 1-aminocyclopropane-1-carboxylate deaminase 
TIGRFAM ID[TIGR01274] 1-aminocyclopropane-1-carboxylate deaminase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.876567 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCTGC AGCGATTTCC CCGCTATCCC CTGACGTTCG GCCCGACGCC CATCCAGCCG 
CTGAAACGAT TGAGCGCGCA CCTGGGCGGC AAGGTGGAGT TGTTTGCCAA GCGCGAAGAC
TGCAACAGCG GCCTGGCCTT CGGCGGCAAT AAAACGCGCA AGCTGGAATA CCTGATCCCG
GAAGCGCTGG AAGGCGGGTA CGACACGCTG GTGTCCATTG GCGGCATTCA GTCGAACCAG
ACGCGCCAGG TGGCCGCCGT GGCGGCGCAC CTCGGTCTGA AGTGCGTGCT GGTGCAGGAA
AACTGGGTGA ACTACTCCGA CGCCGTGTAC GACCGCGTCG GCAATATCGA GATGTCGCGG
ATCATGGGCG CCGATGTGCG CCTCGATTCT GCGGGCTTCG ACATCGGCAT CCGGCCCAGT
TGGGAGCAGG CCATGGACGA CGTGCGCAAG CGCGGCGGCA AGCCGTTCCC GATTCCGGCC
GGCTGCTCCG AACACCCGCT TGGCGGACTG GGCTTTGTGG GCTTTGCTGA GGAAGTGCGC
CAGCAGGAAG CGGAGCTGGG CTTCAAGTTC GACTACATCG TGGTGTGCTC GGTCACGGGC
AGCACGCAGG CCGGCATGGT CGTCGGCTTT GCGGCGGATG GCCGGGCCGA TAAGGTGATC
GGCATCGATG CCTCGGCCAA GCCGGAACAG ACGCGCGCGC AGATTCTCCG CATTGCGCAG
CACACCGCCG AGCTGGTCGA CCTCGGCCGC AACATCACCG AAAGGGACGT GGTGCTCGAC
ACGCGCTATG GCGGCCCGGA ATACGGCCTG CCCAACGAAG GCACGCTTGA AGCGATTCGC
CTGTGCGCGC GCCAGGAAGC CATGCTGACC GACCCGGTGT ACGAGGGGAA ATCCATGCAC
GGCATGATCG ACATGGTGCG CAACGGTGAA TTTCCTGCGG GCTCGCGCGT GCTCTACGCA
CATTTAGGCG GTGTGCCGGC ACTCAACGCG TACAGCTTCA TCTTCCGCAA CGGTTGA
 
Protein sequence
MNLQRFPRYP LTFGPTPIQP LKRLSAHLGG KVELFAKRED CNSGLAFGGN KTRKLEYLIP 
EALEGGYDTL VSIGGIQSNQ TRQVAAVAAH LGLKCVLVQE NWVNYSDAVY DRVGNIEMSR
IMGADVRLDS AGFDIGIRPS WEQAMDDVRK RGGKPFPIPA GCSEHPLGGL GFVGFAEEVR
QQEAELGFKF DYIVVCSVTG STQAGMVVGF AADGRADKVI GIDASAKPEQ TRAQILRIAQ
HTAELVDLGR NITERDVVLD TRYGGPEYGL PNEGTLEAIR LCARQEAMLT DPVYEGKSMH
GMIDMVRNGE FPAGSRVLYA HLGGVPALNA YSFIFRNG