Gene Rpic_1989 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_1989 
Symbol 
ID6287453 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp2098466 
End bp2100373 
Gene Length1908 bp 
Protein Length635 aa 
Translation table11 
GC content63% 
IMG OID642625557 
Productphospholipid/glycerol acyltransferase 
Protein accessionYP_001899556 
Protein GI187929069 
COG category[I] Lipid transport and metabolism 
COG ID[COG0204] 1-acyl-sn-glycerol-3-phosphate acyltransferase 
TIGRFAM ID[TIGR00530] 1-acyl-sn-glycerol-3-phosphate acyltransferases 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCAAT CGAGCCAGTT TTCCCTGCTG AAGCAGCTTC GCTTTGCACC GTTCTTCTGG 
ACCCAGTTCC TGGGCGCGAT GAACGATAAC GTTTTCAAGG TGGCGTTTTC CTCGTTGGTC
ACGTACCACG CTGCGCTGTT CGGCAATGCG GACCCGGCGT CCGCAGCGTT CCTGATTTCA
GCGATCTTCA TCGCGCCGTT TGTGCTGCTG TCTGCCACCA GCGGGCAGAT TGCCGACCGC
ATGGACAAGG CGCGCCTGAT CCGTCTGGTG AAGACATTGG AAATCGCCAT CATGGTGATC
GGCTGTGCAG GTTTCGCGCT GCGCCACGTT GAACTGCTGT ACCTCTGCAC GTTCTTGATG
GGCGTGCACT CGACGCTGTT TGGGCCCGTG AAGTACGCCT ATCTGCCCCA GCATCTGCAA
TCGGCTGAAT TGGTGGGCGG CAACGGGCTG GTGGAAATGG GCACCTTTGT CGCCATCCTG
ATCGGCACCA TTGGCGGCGG CGAACTGGCC AATTACACCC GCAACGGCGA GCTGGTCGGC
CCGCTGTTTA CCGGTATTGC GTGCATTGTC ATTGCCGTGG CCGGGTGGCT GACCGCGCGC
GGTGTGCCCG TCTCGCCGGC GTCGCAGCCG GACCTGCGCA TCAATTGGAA CCCGATCTCC
GAGACCTGGC GCAACCTGAA GCTGGCGAGC AACCAGCGCG CGGTGTTTCT CAGCCTGCTG
GGCATCTCGT GGCTCTGGTT CGTGGGCGCG ACGTTCCTGA CGTCGTTCTT TGCCTACGCG
CGCAATGTGC TCGGCGGCGA CCAGAATGTC GTGACGCTAC TGCTGGCCGT GTTTTCGGTG
GGCATCGGGT TGGGCTCGGT GCTGTGCGAA AAGCTCTCGG GCCGCACGGT GGAGATCGGC
CTGGTGCCGT TTGGCTCGAT CGGCATGACG GTCTTCGCGG TGGACCTGTA CTTTGCTTCG
CATGCCGAGG CATTGGTCGC GCACGACGTG CTGACGGGCA TTTCCGGGTT CCTGCAGAAC
CATCGCCATT GGCGCGTGCT GGCCGATCTG TTCCTGCTGG CGATGTTCGG CGGCTTCTAC
AGCGTGCCCT TGTACGCGCT GATCCAGAGC CGCTGCGAAC CGACGCATCG TGCGCGCATC
ATTGCCGCCA ACAACATCCT CAACGCGCTG TTCATGATCG CTTCTGCCGT GCTGGCGATG
GTGCTCACGC GTGCCGGGTT CACGATCCCG CAGTTATTTC TGGTCACCGG CATCCTCAAT
GCCGTGGTGG CGATCTACAT CTACACGCTG GTGCCGGAAT TCCTGATCCG CTTCGTGATG
TGGCTGCTGA TCCATACCGT TTACCGCGTG AAGGTGGAGG GCTCGGAGCA GATTCCCGAT
GAAGGCCCCT GCCTGCTGGT CTGCAACCAC GTGAGCTTCG TCGATGCCGT GGTGGTGGGC
GCGTTCGTGC GCCGCCCCGT GCGTTTTGTG ATGGATCACC GCATCTTCAA GGTGCCGGTG
CTGTCGTGGT TCTTCAGCAC GGTCAAGGCG ATTCCGATTG CGCCGATGCA CGAAGACCCG
GAGATGCTCA GCCGCGCCTA CGACACCATT GCCGCCGCGC TGGCGGAGGG CGAGGTCGTC
TGCATCTTCC CCGAAGGCAA GATCACCGGC ACGGGCGAGA TGAACCCGTT CAAGGAAGGC
ATGCGCCGCA TCATCGAACG CACACCCGTG CCGGTGGTAC CGATGGCGCT GCGCGGCCTC
TGGGGCAGCT TTTTCTCGCG CAAGGGCGGG GCGGCGATGT CGCGCCCGTT CCGTCGCGGC
TTCCTCAACA AGCTGGAACT GTGCATCGGC ACGCCGGTGC CGGCGCAGGC CGTGTCGCTG
GAAGCGATGC AGGCCGCCGT GCTGGCGTTG CGCGGCGAGC GGCTCTAG
 
Protein sequence
MSQSSQFSLL KQLRFAPFFW TQFLGAMNDN VFKVAFSSLV TYHAALFGNA DPASAAFLIS 
AIFIAPFVLL SATSGQIADR MDKARLIRLV KTLEIAIMVI GCAGFALRHV ELLYLCTFLM
GVHSTLFGPV KYAYLPQHLQ SAELVGGNGL VEMGTFVAIL IGTIGGGELA NYTRNGELVG
PLFTGIACIV IAVAGWLTAR GVPVSPASQP DLRINWNPIS ETWRNLKLAS NQRAVFLSLL
GISWLWFVGA TFLTSFFAYA RNVLGGDQNV VTLLLAVFSV GIGLGSVLCE KLSGRTVEIG
LVPFGSIGMT VFAVDLYFAS HAEALVAHDV LTGISGFLQN HRHWRVLADL FLLAMFGGFY
SVPLYALIQS RCEPTHRARI IAANNILNAL FMIASAVLAM VLTRAGFTIP QLFLVTGILN
AVVAIYIYTL VPEFLIRFVM WLLIHTVYRV KVEGSEQIPD EGPCLLVCNH VSFVDAVVVG
AFVRRPVRFV MDHRIFKVPV LSWFFSTVKA IPIAPMHEDP EMLSRAYDTI AAALAEGEVV
CIFPEGKITG TGEMNPFKEG MRRIIERTPV PVVPMALRGL WGSFFSRKGG AAMSRPFRRG
FLNKLELCIG TPVPAQAVSL EAMQAAVLAL RGERL