| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1985 |
|---|
| Symbol | |
|---|
| ID | 6289807 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 2094021 |
|---|
| End bp | 2094806 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642625553 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_001899552 |
|---|
| Protein GI | 187929065 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTTTGT CGATCAATCT GGAAGGCAAG GTCGCGCTGA TCACGGGCGC GTCGAGCGGC
CTGGGCGCGC GTTTCGCGCA CACGCTGGCG GCCGCCGGCG CGAAAGTCGT GCTGGCCTCG
CGCCGTGTCG AACGGCTGAA AGAACTGCGC GCCGACATCG AATCGAAGGG CGGCAGCGCC
CACGTCGTAC GTCTGGACGT GACGGATCCG GACAGCATCC GATCGGCCAT CGCCCACGCT
GAAACCGAAG CCGGCACGAT CGACATCCTG GTCAACAACT CTGGCGTTTC GACCACGCAG
CGCATGGTGG ACGTCACGCC CGATGACTTC GATTTCGTAT TTGATACCAA CACGCGTGGC
GCCTTCTTTG TGGCGCAGGA AACGGCCAAG CGCATGATTG CGCGGGCCAA GGGCGCGGAG
AAGAACGGCT CGCCGCTGCC GCAATCGCGC ATCGTCAACA TTGCATCTGT GGCGGGGCTG
AAGGTGCTGT CGCAGATTGG CGTGTATTGC ATGAGCAAGG CAGCTGTGGT GCACATGACC
AAGGCCATGG CGCTGGAGTG GGGCCGTTAC GGCATCAATA CCAACGCGAT CTGCCCGGGC
TATATCGACA CCGAAATCAA TCATCACCAT TGGGAAACCG AACCTGGCCA GAAGCTGGTG
CAGATGCTGC CGCGCAAGCG CGTCGGCAAG CCGGAAGACC TCGATGGGCT GATTCTGCTG
TTGGCGTCGG ATCAGTCCGA CTTCATCAAC GGTGCCGTCA TCAACGCCGA CGACGGCATG
GTGTAA
|
|---|
| Protein sequence | MGLSINLEGK VALITGASSG LGARFAHTLA AAGAKVVLAS RRVERLKELR ADIESKGGSA
HVVRLDVTDP DSIRSAIAHA ETEAGTIDIL VNNSGVSTTQ RMVDVTPDDF DFVFDTNTRG
AFFVAQETAK RMIARAKGAE KNGSPLPQSR IVNIASVAGL KVLSQIGVYC MSKAAVVHMT
KAMALEWGRY GINTNAICPG YIDTEINHHH WETEPGQKLV QMLPRKRVGK PEDLDGLILL
LASDQSDFIN GAVINADDGM V
|
|---|
| |