Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_1962 |
Symbol | |
ID | 6288001 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 2072020 |
End bp | 2073450 |
Gene Length | 1431 bp |
Protein Length | 476 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642625528 |
Product | amino acid permease-associated region |
Protein accession | YP_001899529 |
Protein GI | 187929042 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0531] Amino acid transporters |
TIGRFAM ID | [TIGR00909] amino acid transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.179903 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.921716 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTTGT TTCGTACCAA AAACGTGGAT CACATGATCC GCACGGGCCA CAGCGACACC GGCCTGAAGA AAGTCCTCGG GCCCCTCGAC CTGACCTTCC TGGGTGTCGG CGCCATCATC GGAACCGGCA TCTTCGTGCT GACCGGCACC GGCGCGCTGA CGGCAGGGCC GGCGCTCACG CTGTCCTTCA TCATCGCAGC GCTTGCATGC GGGTTTGCCG CGCTGTGCTA CGCCGAATTC GCCTCGACCA TTCCCGTGTC GGGCTCCATC TATACGTATG CCTACGCCAC GATGGGCGAG CTGGTCGCCT GGATCATCGG CTGGGATCTG ATGCTCGAAT ATGGCTTGGC CACATCTGCT GTTTCGGTGG GTTGGTCCGG CTATTTCCAG TCGCTGCTGT CGGGCTTCGG CCTTCATCTG CCGGTGGCGC TCACTGCCGC TCCGGGCGCA ATCCCGGGCG TGCAGACACT GTTCAACCTT CCGGCGCTGG TGATCATGCT GCTGATCACG ACGCTGCTGT CGTTTGGCAT TCGCGAATCG GCGCGTGCCA ACAACATCAT GGTGGCGATC AAGGTAACGG TGGTGGTGCT GTTCATCGTC GTGGGTGTGC GCCATGTGCA GCCGGCCAAC TGGCAGCCGT TCATGCCGTT CGGCATGGAA GGCGTGTTTG GCGCGGCGGC CATCGTGTTC TTCGCTTTCA TCGGCTTCGA TGCGGTGACG TCCGCGGCCG AAGAGGTGCG CAATCCCAAG CGCGACTTGC CGATCGGCAT CATCGGTTCA CTGGCGGTCT GCACGATTCT CTATGTACTG GTGGCCGCCA TCATGACGGG CATCGTGCCG TTCGCGAAGT TTGCAGGCGT GGATCACCCC GTGTCGCTGG CGCTGCAAGT GGCCGGCGAA AGCTGGGTGG CAGGCTTTGT TGATCTGGGC GCCATCATTG GCATGACCAC GGTGATCCTG GTGATGGCGT ATGGCCAGAC TCGCATCATC TTCGCGATGT CGCGCGACGG TCTGCTGCCC AAGCGCCTGT CGCACATTCA TCCGCGCTAC GCGACGCCGT TCCTGAACAC CTGGGTGGTC GGCATCGTCT TCGCGGTGAT CGCCGCATTC GTGCCGCTGA ACGTGTTGGC TGAGCTGATC AACATCGGAA CGCTGGCAGC GTTCTCGCTG ATTGCCGTTG CCGTGCTGGT GCTGCGCCGT ACCCGTCCAG ACCTTCATCG CGGCTTCCGT TGCCCAGGCG TGCCGGTGGT GCCGCTGCTG GCCATCGGCA TGTGCCTGTT CCTGATGAGC CACCTGCAGG CCGTCACCTG GATCGCCTTT TTGGTGTGGG TCGCGATCGG CTTGCTGGTG TACTTCGGCT ACGCGCGCCG CCGCTCGCTG CTGCACACGT CGGAGCATGG CGCTGCACCC GTTTCCGAAA CGGTGCACTG A
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Protein sequence | MSLFRTKNVD HMIRTGHSDT GLKKVLGPLD LTFLGVGAII GTGIFVLTGT GALTAGPALT LSFIIAALAC GFAALCYAEF ASTIPVSGSI YTYAYATMGE LVAWIIGWDL MLEYGLATSA VSVGWSGYFQ SLLSGFGLHL PVALTAAPGA IPGVQTLFNL PALVIMLLIT TLLSFGIRES ARANNIMVAI KVTVVVLFIV VGVRHVQPAN WQPFMPFGME GVFGAAAIVF FAFIGFDAVT SAAEEVRNPK RDLPIGIIGS LAVCTILYVL VAAIMTGIVP FAKFAGVDHP VSLALQVAGE SWVAGFVDLG AIIGMTTVIL VMAYGQTRII FAMSRDGLLP KRLSHIHPRY ATPFLNTWVV GIVFAVIAAF VPLNVLAELI NIGTLAAFSL IAVAVLVLRR TRPDLHRGFR CPGVPVVPLL AIGMCLFLMS HLQAVTWIAF LVWVAIGLLV YFGYARRRSL LHTSEHGAAP VSETVH
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