Gene Rpic_1948 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_1948 
Symbol 
ID6289620 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp2057190 
End bp2059766 
Gene Length2577 bp 
Protein Length858 aa 
Translation table11 
GC content65% 
IMG OID642625514 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_001899515 
Protein GI187929028 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.355681 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0222076 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCACTC CTTTACCTCC GCAGAATTCC GGCGTTCGTC CGCCCATCAT GCTTGCCCCC 
TCCCACGCTT CGCAGGACCC GGCCGCCAAG TCCGAGCCGT CAACGCCTGC GGCGCCTGCG
CCCATTTCCG TGAACGCGTC CGAACAGCCG TCGGACGAGG CCGTTCGCCC GAACATGCCC
CGCCGCCTGT GGCTGACCCG CCTGGGCCGG CTGTGGACGA CCAACTGGTT CATGTTCATC
CCGCTGGTGG CAATCGTCCT GTTTGCTGGC GCGATGATTT TCATCCTGTA TCAATTGCAC
GCCACGGAGG TGCAGCAGCA GCGCGACGCC CTCTACCGCG ATGCCGCCTG GGCCGAGCAG
AAGGTTCGCC TGTCCCTGCA GAGCAACCAG GATCAGGTGG CCGCCCTGGC ACGCGACATC
GGTGCTGCGC AGCTTGACCC GAGCGCCTAT CGCGATGCCG CCCGCCAGCT CCTGCGCGAG
AACCCGGAGC TTGTCTTCAT CAACTGGCTG GATGCCACGC GCCGCCCGCG CTGGGCGTTC
CCGTCCACCT CCGAATTCAC GGCGCGCGTG CGCGAAACAC GCGACCATCC GCTCGAACCC
GAAATCCAAT CTGCCTACGA TGCCGCGCGT GAAACGCAGC GTGCCGTCTA TTCGCGCCCC
ATCCAGAACG AGCGCGGCGA GAGCTTCATG CTGATGGAAG TCCCGATCGT GCGCGACAAC
GAATTCCTCG GCACGGTGGG CGCCATGTAT TCGGTCACGG GCATCCTCAC GCAACTGCTG
CCGGGCGAGT TGACAGACCG CTACCGCTTC TCGCTGGTCG ACAAGAACAA CGTGGTCCGC
GCAAGCACGT CGTTGCGGCC GGTGCCCAAG GCGGCGGCGT CGTACGAGGT GCTGCTCGAC
CCACCGGGAC ATTCGCTCTC GCTGCGGGCC GAGGCGTATC CCGCTCCGTC CAACCTGCCC
AACAACATGC TGATGTGGCT GGTGGCCGGC CTGTCGTGCT TCGTGATCTG GAGCCTCTGG
AGCGTGTGGC GCCACACCAG CCGCCGCTCT GAAGCGCAGC GCGCGTTGCT GGCGGAAACG
TCGTTCCGCC GCGCTATGGA AAACTCCATG GTGATCGGCA TGCGTTCGCT CGACCTCAAC
GGCCGCATCA CCTACGTGAA CCCGGCGTTC TGCCGCATGA TCGGCTGGAC GGAAGCCGAG
CTGGTCGGGC GCATGCCGCC CTTCCCGTAT TGGCCGCCCA ATGAGATCGG CGAGATGCAG
AAGCACATCG AGCTGACCTT GCGTGGCAAG GCGCCCGCCA ACGGCATGGA ATTGCGCATG
ATGCGCCGCG ACGGTACGAG CTTCTATGCG CGGATGTACG TCTCGCCGCT GATCGATGCG
CGCGGCCGGC ACACGGGGTG GATGAGTTCC ATCACGGACA TTACTGAGCC CAAACGCGCC
CGTGAAGACT TGGCCGCCGC GCACGACCGC TTCACCACGG TGCTGGAGAG CCTGGATGCG
GCCGTGTCCG TGCTCTCGAC CGACAAGGCG GAGCTGCTGT TCGCCAACCG CTACTACCGC
CAGCTTTTCG GCTGGGAGGC GTTCGGCCAC CTGCAGCTCT CCGGCAACGA CGTCAACACG
GAAGACGTTT CCAGCGATGC ACTCGACCTG GTGGACGCCT ACGCCGGCCT GCCCGCGTCC
GAGTTGACAC CGCACGCGGC AGATGCGCGC GAAATCTATG TGCCATCGAT GCAGAAGTGG
TTTGAAGTGC GGCGCCGCTA CATCCAGTGG GTCGACGGCC ACCTCGCACA GATGCAGATC
GCCACCGACA TCACCGTGCG CAAGGCCGCC GAAGAGATGA CGCGCCAGCA CGAAGAGCGC
CTGCAGTTCA CCAGCCGCCT GACGACGATG GGCGAGATGG CCTCATCGCT GGCGCACGAG
CTGAACCAGC CGCTGGCTGC CATCAACAAC TACTGCATGG GCGCCGTCGG CCGCCTGAAG
AGCGGACGCA GCACGCCGGA AGAGCTGATC CCGGTGCTTG AGAAGACCTC CGCCCAGGCC
GTGCGTGCCG GCACCATCAT CCAGCGCATC CGCGGCTTCG TGAAACGCAG CCAGCCGCAG
CGGCGCGAAT CCGACCTGCG CGAGATCGTT GCCGACGCCG TGGGTCTGGC CGAACTCGAA
GCCACGCGGC GCGGCATCAC CATTCTCACG CGCCTGCCAG GCGACTTGCC GCATCTGTAT
GTCGATCCGG TGCTCATCGA GCAGGTGCTC GTCAATCTGC TCAAGAACGC CGCCGAAGCC
ATGGCCGCCC ACCCGCGCCT GCGCGCCGCC AGCGTGCTGC GCCTGCACGC CAACCTGATC
AACGACCCGG AAAATTCCGT GCTGATCGAG GTGATCGACC AGGGCCCGGG CGTGGACGAC
AGCACTAAGG AGCGGCTGTT CGAGCCGTTC TTCAGTACAA AATCCGACGG CATGGGTATG
GGACTGAATA TCTGCCGCTC CATCATAGAA TCCCACCTCG GCAGGCTCTG GGTAGAAAAC
AACGCCGATG GCATCGGCTG TACGTTTAAA ATCATCTTGC CGCTGAATCC GCTGTAA
 
Protein sequence
MSTPLPPQNS GVRPPIMLAP SHASQDPAAK SEPSTPAAPA PISVNASEQP SDEAVRPNMP 
RRLWLTRLGR LWTTNWFMFI PLVAIVLFAG AMIFILYQLH ATEVQQQRDA LYRDAAWAEQ
KVRLSLQSNQ DQVAALARDI GAAQLDPSAY RDAARQLLRE NPELVFINWL DATRRPRWAF
PSTSEFTARV RETRDHPLEP EIQSAYDAAR ETQRAVYSRP IQNERGESFM LMEVPIVRDN
EFLGTVGAMY SVTGILTQLL PGELTDRYRF SLVDKNNVVR ASTSLRPVPK AAASYEVLLD
PPGHSLSLRA EAYPAPSNLP NNMLMWLVAG LSCFVIWSLW SVWRHTSRRS EAQRALLAET
SFRRAMENSM VIGMRSLDLN GRITYVNPAF CRMIGWTEAE LVGRMPPFPY WPPNEIGEMQ
KHIELTLRGK APANGMELRM MRRDGTSFYA RMYVSPLIDA RGRHTGWMSS ITDITEPKRA
REDLAAAHDR FTTVLESLDA AVSVLSTDKA ELLFANRYYR QLFGWEAFGH LQLSGNDVNT
EDVSSDALDL VDAYAGLPAS ELTPHAADAR EIYVPSMQKW FEVRRRYIQW VDGHLAQMQI
ATDITVRKAA EEMTRQHEER LQFTSRLTTM GEMASSLAHE LNQPLAAINN YCMGAVGRLK
SGRSTPEELI PVLEKTSAQA VRAGTIIQRI RGFVKRSQPQ RRESDLREIV ADAVGLAELE
ATRRGITILT RLPGDLPHLY VDPVLIEQVL VNLLKNAAEA MAAHPRLRAA SVLRLHANLI
NDPENSVLIE VIDQGPGVDD STKERLFEPF FSTKSDGMGM GLNICRSIIE SHLGRLWVEN
NADGIGCTFK IILPLNPL