| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1948 |
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| Symbol | |
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| ID | 6289620 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 2057190 |
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| End bp | 2059766 |
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| Gene Length | 2577 bp |
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| Protein Length | 858 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642625514 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_001899515 |
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| Protein GI | 187929028 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.355681 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.0222076 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCACTC CTTTACCTCC GCAGAATTCC GGCGTTCGTC CGCCCATCAT GCTTGCCCCC
TCCCACGCTT CGCAGGACCC GGCCGCCAAG TCCGAGCCGT CAACGCCTGC GGCGCCTGCG
CCCATTTCCG TGAACGCGTC CGAACAGCCG TCGGACGAGG CCGTTCGCCC GAACATGCCC
CGCCGCCTGT GGCTGACCCG CCTGGGCCGG CTGTGGACGA CCAACTGGTT CATGTTCATC
CCGCTGGTGG CAATCGTCCT GTTTGCTGGC GCGATGATTT TCATCCTGTA TCAATTGCAC
GCCACGGAGG TGCAGCAGCA GCGCGACGCC CTCTACCGCG ATGCCGCCTG GGCCGAGCAG
AAGGTTCGCC TGTCCCTGCA GAGCAACCAG GATCAGGTGG CCGCCCTGGC ACGCGACATC
GGTGCTGCGC AGCTTGACCC GAGCGCCTAT CGCGATGCCG CCCGCCAGCT CCTGCGCGAG
AACCCGGAGC TTGTCTTCAT CAACTGGCTG GATGCCACGC GCCGCCCGCG CTGGGCGTTC
CCGTCCACCT CCGAATTCAC GGCGCGCGTG CGCGAAACAC GCGACCATCC GCTCGAACCC
GAAATCCAAT CTGCCTACGA TGCCGCGCGT GAAACGCAGC GTGCCGTCTA TTCGCGCCCC
ATCCAGAACG AGCGCGGCGA GAGCTTCATG CTGATGGAAG TCCCGATCGT GCGCGACAAC
GAATTCCTCG GCACGGTGGG CGCCATGTAT TCGGTCACGG GCATCCTCAC GCAACTGCTG
CCGGGCGAGT TGACAGACCG CTACCGCTTC TCGCTGGTCG ACAAGAACAA CGTGGTCCGC
GCAAGCACGT CGTTGCGGCC GGTGCCCAAG GCGGCGGCGT CGTACGAGGT GCTGCTCGAC
CCACCGGGAC ATTCGCTCTC GCTGCGGGCC GAGGCGTATC CCGCTCCGTC CAACCTGCCC
AACAACATGC TGATGTGGCT GGTGGCCGGC CTGTCGTGCT TCGTGATCTG GAGCCTCTGG
AGCGTGTGGC GCCACACCAG CCGCCGCTCT GAAGCGCAGC GCGCGTTGCT GGCGGAAACG
TCGTTCCGCC GCGCTATGGA AAACTCCATG GTGATCGGCA TGCGTTCGCT CGACCTCAAC
GGCCGCATCA CCTACGTGAA CCCGGCGTTC TGCCGCATGA TCGGCTGGAC GGAAGCCGAG
CTGGTCGGGC GCATGCCGCC CTTCCCGTAT TGGCCGCCCA ATGAGATCGG CGAGATGCAG
AAGCACATCG AGCTGACCTT GCGTGGCAAG GCGCCCGCCA ACGGCATGGA ATTGCGCATG
ATGCGCCGCG ACGGTACGAG CTTCTATGCG CGGATGTACG TCTCGCCGCT GATCGATGCG
CGCGGCCGGC ACACGGGGTG GATGAGTTCC ATCACGGACA TTACTGAGCC CAAACGCGCC
CGTGAAGACT TGGCCGCCGC GCACGACCGC TTCACCACGG TGCTGGAGAG CCTGGATGCG
GCCGTGTCCG TGCTCTCGAC CGACAAGGCG GAGCTGCTGT TCGCCAACCG CTACTACCGC
CAGCTTTTCG GCTGGGAGGC GTTCGGCCAC CTGCAGCTCT CCGGCAACGA CGTCAACACG
GAAGACGTTT CCAGCGATGC ACTCGACCTG GTGGACGCCT ACGCCGGCCT GCCCGCGTCC
GAGTTGACAC CGCACGCGGC AGATGCGCGC GAAATCTATG TGCCATCGAT GCAGAAGTGG
TTTGAAGTGC GGCGCCGCTA CATCCAGTGG GTCGACGGCC ACCTCGCACA GATGCAGATC
GCCACCGACA TCACCGTGCG CAAGGCCGCC GAAGAGATGA CGCGCCAGCA CGAAGAGCGC
CTGCAGTTCA CCAGCCGCCT GACGACGATG GGCGAGATGG CCTCATCGCT GGCGCACGAG
CTGAACCAGC CGCTGGCTGC CATCAACAAC TACTGCATGG GCGCCGTCGG CCGCCTGAAG
AGCGGACGCA GCACGCCGGA AGAGCTGATC CCGGTGCTTG AGAAGACCTC CGCCCAGGCC
GTGCGTGCCG GCACCATCAT CCAGCGCATC CGCGGCTTCG TGAAACGCAG CCAGCCGCAG
CGGCGCGAAT CCGACCTGCG CGAGATCGTT GCCGACGCCG TGGGTCTGGC CGAACTCGAA
GCCACGCGGC GCGGCATCAC CATTCTCACG CGCCTGCCAG GCGACTTGCC GCATCTGTAT
GTCGATCCGG TGCTCATCGA GCAGGTGCTC GTCAATCTGC TCAAGAACGC CGCCGAAGCC
ATGGCCGCCC ACCCGCGCCT GCGCGCCGCC AGCGTGCTGC GCCTGCACGC CAACCTGATC
AACGACCCGG AAAATTCCGT GCTGATCGAG GTGATCGACC AGGGCCCGGG CGTGGACGAC
AGCACTAAGG AGCGGCTGTT CGAGCCGTTC TTCAGTACAA AATCCGACGG CATGGGTATG
GGACTGAATA TCTGCCGCTC CATCATAGAA TCCCACCTCG GCAGGCTCTG GGTAGAAAAC
AACGCCGATG GCATCGGCTG TACGTTTAAA ATCATCTTGC CGCTGAATCC GCTGTAA
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| Protein sequence | MSTPLPPQNS GVRPPIMLAP SHASQDPAAK SEPSTPAAPA PISVNASEQP SDEAVRPNMP
RRLWLTRLGR LWTTNWFMFI PLVAIVLFAG AMIFILYQLH ATEVQQQRDA LYRDAAWAEQ
KVRLSLQSNQ DQVAALARDI GAAQLDPSAY RDAARQLLRE NPELVFINWL DATRRPRWAF
PSTSEFTARV RETRDHPLEP EIQSAYDAAR ETQRAVYSRP IQNERGESFM LMEVPIVRDN
EFLGTVGAMY SVTGILTQLL PGELTDRYRF SLVDKNNVVR ASTSLRPVPK AAASYEVLLD
PPGHSLSLRA EAYPAPSNLP NNMLMWLVAG LSCFVIWSLW SVWRHTSRRS EAQRALLAET
SFRRAMENSM VIGMRSLDLN GRITYVNPAF CRMIGWTEAE LVGRMPPFPY WPPNEIGEMQ
KHIELTLRGK APANGMELRM MRRDGTSFYA RMYVSPLIDA RGRHTGWMSS ITDITEPKRA
REDLAAAHDR FTTVLESLDA AVSVLSTDKA ELLFANRYYR QLFGWEAFGH LQLSGNDVNT
EDVSSDALDL VDAYAGLPAS ELTPHAADAR EIYVPSMQKW FEVRRRYIQW VDGHLAQMQI
ATDITVRKAA EEMTRQHEER LQFTSRLTTM GEMASSLAHE LNQPLAAINN YCMGAVGRLK
SGRSTPEELI PVLEKTSAQA VRAGTIIQRI RGFVKRSQPQ RRESDLREIV ADAVGLAELE
ATRRGITILT RLPGDLPHLY VDPVLIEQVL VNLLKNAAEA MAAHPRLRAA SVLRLHANLI
NDPENSVLIE VIDQGPGVDD STKERLFEPF FSTKSDGMGM GLNICRSIIE SHLGRLWVEN
NADGIGCTFK IILPLNPL
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