| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1939 |
|---|
| Symbol | |
|---|
| ID | 6286187 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 2045479 |
|---|
| End bp | 2045922 |
|---|
| Gene Length | 444 bp |
|---|
| Protein Length | 147 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642625505 |
|---|
| Product | thioesterase superfamily protein |
|---|
| Protein accession | YP_001899506 |
|---|
| Protein GI | 187929019 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0824] Predicted thioesterase |
|---|
| TIGRFAM ID | [TIGR00051] acyl-CoA thioester hydrolase, YbgC/YbaW family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.158219 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.00402541 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGC CCCGTCAGAC GCGCGACGAC TACCGCCACT TCCACACCAT CACCACGCGC
TGGATGGACA ACGACGTCTA CGGTCACGTC AACAACGTCG TCTATTACAG CTACTTCGAT
ACCGTGGTGA ACGCGTATCT GATCGAGCAG GGCGTGCTGA ACCCTGAACA CAGCGACACC
ATCGGCCTCG TCATCGAGAC ACAATGCAAC TACTTCGCGC CGCTGTCGTT TCCCGATCCC
GTGGTGGCAG GGCTGCGCGT TGCACGCCTT GGCAACACGA GCGTGCGCTA TGAGGTGGGT
CTGTTCCGCT GCGACGCCCA GGAGGCCGCC GCTCAGGGCC ATTTCGTGCA CGTCTACGTC
GACCGCGAAA CACGTCGCCC GGTGCCACTG CCCGATGCGC TGCGTGCTGT GCTCGAACCG
CTCGCGTCCA ATATCACCGC CTGA
|
|---|
| Protein sequence | MSTPRQTRDD YRHFHTITTR WMDNDVYGHV NNVVYYSYFD TVVNAYLIEQ GVLNPEHSDT
IGLVIETQCN YFAPLSFPDP VVAGLRVARL GNTSVRYEVG LFRCDAQEAA AQGHFVHVYV
DRETRRPVPL PDALRAVLEP LASNITA
|
|---|
| |