| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1938 |
|---|
| Symbol | |
|---|
| ID | 6286186 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 2044756 |
|---|
| End bp | 2045463 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642625504 |
|---|
| Product | nitroreductase |
|---|
| Protein accession | YP_001899505 |
|---|
| Protein GI | 187929018 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0778] Nitroreductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.255877 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.00446173 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACC GACGCCCCAC CTCCACAGAA GTCGAACGCG TCGATCAGGC AATCACTTCG
CGCCGCTCCG TTCGCGCATT CTTGCCGACG CCCGTCGCCC GGGAAGACAT CGAGGCGATC
CTCGATGTAG CGCGCCGTGC GCCGTCAGGC AGCAATACGC AGCCGTGGAA GGTCTATGTG
CTGACGGGCG AGTCGAAGGC GCGCTTGTCC GAATCCGTGT TGGTGGCGTA CGACCACCCG
GAGGTGGACA CGCTGCATCG CGAGGAGTAT CCGTACTACC CGCGCACGTG GGTCGATCCG
TACCAGAGTC GGCGCCGCAA GGTCGGCTGG GATCTTTATG GCCTGCTCGG CATTGGACGC
TCCGACAAGG AACGCATGCA CGCACAGCAC GCGCGCAACT TCCGATTCTT CGATGCGCCG
GTCGGCATCA TCTTCACAAT CGACCGCGTG ATGGAGCAGG GCAGTTGGCT CGATTACGGC
ATGTTCCTGG AAGCCGTGAT GGTGGCCGCG CGTGCTCGGG GCATCGATAC ATGCCCACAG
GCCGCGTTCA CGCAGTTCCA TCGGGTCATC GCAGAGCATC TCGGGCTGAC GGATGACGAG
ATGGTCGTCT GCGGCATGTC GATGGGTTAC GCGAATCCTG CCGCCATCGA AAATACGCTT
GTCACCGAGC GGGCGCCTGT CTCCGACTTC ACCCGGTTCC TGGACTGA
|
|---|
| Protein sequence | MTDRRPTSTE VERVDQAITS RRSVRAFLPT PVAREDIEAI LDVARRAPSG SNTQPWKVYV
LTGESKARLS ESVLVAYDHP EVDTLHREEY PYYPRTWVDP YQSRRRKVGW DLYGLLGIGR
SDKERMHAQH ARNFRFFDAP VGIIFTIDRV MEQGSWLDYG MFLEAVMVAA RARGIDTCPQ
AAFTQFHRVI AEHLGLTDDE MVVCGMSMGY ANPAAIENTL VTERAPVSDF TRFLD
|
|---|
| |