Gene Rpic_1888 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_1888 
Symbol 
ID6288380 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp1987481 
End bp1988857 
Gene Length1377 bp 
Protein Length458 aa 
Translation table11 
GC content62% 
IMG OID642625452 
Productphosphate-selective porin O and P 
Protein accessionYP_001899456 
Protein GI187928969 
COG category[D] Cell cycle control, cell division, chromosome partitioning 
COG ID[COG4942] Membrane-bound metallopeptidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00748844 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.621098 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGAA CCGCCTTGTC GGTAGCCGCC GCCATTGCGC TGATGGGGGC CGGCGCAGCC 
AATGCCGCCA CCACCGCGCA ACTCGAACAG AAACTCGACG CCATGGCCGC GCAGATTGAA
GCGCTCAAGG CCGAACTGAA AGAGGTGAAG GCGCAGAACG CGACGCTCGC CACGCAGCAG
CAGACGCAGG CGAAGGCACA GGCACAGCAA ACCGCGGCCC TGCAAGACGT GCAGCAGACC
GTGCAGACGG CACAGCTCGC CTCGACCAGG CCGTCGCCGC TGGACAACCT CACGCTGTGG
GGCTACGGCG AAGCCAACTA CAGCCGCCCG ACGCGCCGTT CCGAAGACAC CAAGTTCGAC
CTCGCGCGCG CAGTGTTCGG TATCGGCTAC AAGTTCGACG ACAAGACGCG CTTCAACTCC
GAATTCGAGA TCGAGCACGC CATCACGTCG GCCACCGACT CGGGTGAATT CGAAGTCGAG
CAGTTCTACA TCGACCACAA GCTGACCGAC AAGATCGGCC TGAATGCAGG CCTGTTCCTG
ATCCCAGCGG GGTTCATCAA CCGCAACCAT GAGCCGACCA ACTACTACGG CGTGCATCGC
AACTTTGTCG AGACGCTGAT CATCCCGAGC ACGTGGCGTG AGGGCGGTCT CTCGCTGTAC
GGCGATACCG ATTTCGGCCT GAACTGGAAT GTGGGTCTGA CTACCGGGCT GGACCTGGCC
AAGTGGAACT TCAACCCGGA GAACCCGCTG TTTAAGTCCG CGCTGGAGAT GCAGAACAAC
GCCATCGCCC CGATGCAGAC CTCGCACCAG GAACTGGGGC TGGCCAACGC CAAGAACCTG
TCGCAGTATG TGGCGCTGAA CTACACCGGT ATTTCGGGCG TAACGCTGGG CGGCTCGGTC
TTCACGGGCA AGAGCAGCCG GTCGAGCACG GAAGCCGTGC TGCCTGAACA GCGCGCCACG
CTGTACGAAG CGCACGCGCG CTGGACACCG GGCAAGTGGG ATCTGTCTGC CCTGTATGCA
CGCGGTACGT TCAGCAACAC CGCTGCCGCC AATCAGCTGA ACCCGGGTGC CGCCAACCCG
ATGCCGGCGG CGTTCTACGG CTGGTATGCA CAGGCGGCCT ACAACCTGTG GCAGAAGGGC
GACTACCGCT TCGCGCCGTT CGTCCGCTAT GAACGCTACA ACATGGCCGA GAAGTACGAA
GGTCTGGCTC CGGGCTTCAC GATGCCTGCC GGTTGGCCCT CGCTGTCGGA CACCGTGTAC
ACCATCGGCG CGAACTTCTA TCTGAACCCG AACGTGGTCT TCAAGGTGGA CTACCAGCGC
TTCAAGCAGA ACCGCGATTT CTCGCGTGTG GATCTGGGCC TGGGCGTGTC GTTCTAA
 
Protein sequence
MKRTALSVAA AIALMGAGAA NAATTAQLEQ KLDAMAAQIE ALKAELKEVK AQNATLATQQ 
QTQAKAQAQQ TAALQDVQQT VQTAQLASTR PSPLDNLTLW GYGEANYSRP TRRSEDTKFD
LARAVFGIGY KFDDKTRFNS EFEIEHAITS ATDSGEFEVE QFYIDHKLTD KIGLNAGLFL
IPAGFINRNH EPTNYYGVHR NFVETLIIPS TWREGGLSLY GDTDFGLNWN VGLTTGLDLA
KWNFNPENPL FKSALEMQNN AIAPMQTSHQ ELGLANAKNL SQYVALNYTG ISGVTLGGSV
FTGKSSRSST EAVLPEQRAT LYEAHARWTP GKWDLSALYA RGTFSNTAAA NQLNPGAANP
MPAAFYGWYA QAAYNLWQKG DYRFAPFVRY ERYNMAEKYE GLAPGFTMPA GWPSLSDTVY
TIGANFYLNP NVVFKVDYQR FKQNRDFSRV DLGLGVSF