Gene Rpic_1860 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_1860 
Symbol 
ID6289857 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp1957235 
End bp1958830 
Gene Length1596 bp 
Protein Length531 aa 
Translation table11 
GC content69% 
IMG OID642625422 
Productcarbohydrate kinase, YjeF related protein 
Protein accessionYP_001899428 
Protein GI187928941 
COG category[G] Carbohydrate transport and metabolism
[S] Function unknown 
COG ID[COG0062] Uncharacterized conserved protein
[COG0063] Predicted sugar kinase 
TIGRFAM ID[TIGR00196] yjeF C-terminal region, hydroxyethylthiazole kinase-related
[TIGR00197] yjeF N-terminal region 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0000355774 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCCTCAC ACCCTAGCTG GCGCGAAATC CTGATCGACG GCGCACTGGC CGCACACCAC 
GGCGCCGACC TGCTCTTCGG CACAGCGGGC ATCCGCGCGC TGGAAGCAGC TGCGTACCGA
ACCCTCGAAC CCTTCACCTT GATGGCCAGG GCGGGCGAAG CCGCCGCCGA CTGGCTGCAG
ACGCGCGCGC CACACGGGCA TGTCCTGCTC GTTGCCGGCC CAGGCAACAA CGGTGGCGAT
GCGCTCGTTG CGGCGACGGT GCTGCATCTG GCGGGGCGCG CCGTCACGGT GTGGCTTGCC
GCAGACCCGG CCAAGCTGCC TGATGACGCG CGCCGCGCCT GGACGGAGGC TTGTGCCGCG
AATGTCCCCA TTGAACCTCT GCACACGGCC GTTTCGGTGC CGGCGGCTGC CTCCGTCATC
GTCGACGGCC TCTTTGGTAT CGGACTCGCC CGGCCGCTGA CGGGGTTGCA TGCCGCACTG
GTCGACACCA TCAACGCCAG CGGCTTGCCG GTGTTTGCGC TGGACATTCC CTCGGGGCTG
AACGGCGATA CGGGCCAGCC GCCCGCCCCA GATTCGCCCG TCATTCAGGC ACGCGCCACC
ATCACGTTCC TCGCCGTCAA ACCGGGGTTG CTGACCGGTG ATGGCCGCGA CGCCACCGGC
GACATCGCGC TGGCCGACTT GCAGGCTGCG CAAGCGGCTT ATGACGGCGT GATTGAAGCG
GACGCCTTTG TCAACACGCC GTCACGCTGG CTTGCGCACG TGCCGCGCCG GCGGCATAAC
GGCCACAAGG GCACATATGG CAGTGCGGCA ATCGTGGGCG GTGCGGCAGG CATGGTCGGA
GCGCCGCTGC TGTCGGCGCG CGGAGCGCTC TATCTGGGCG CGGGCAAGGT GCACGTGGTC
TCGCTTGCCG CCGATGCACC GCGCATCGAC CCCGCGCAAC CGGAATTGAT GCTGCACACC
TGGGGCGCAC TCGATCTGGG CGGCATGCAG GCGCTGGCCG TGGGCCCCGG CATGGGTACC
GGCAAGGAGT CGGAAGCCGC GCTCGAGCAT CTGCTGGACC GCATGCTGTC GGTGCGCACG
CCCGCCGTGT TCGACGCCGA TGCACTGAAC CTCTTTGCGA AAACGCCCGC CCTGCTCGCG
CGTCTCACGC AACTGGCCGG AAGCGGTGTG CCGTTGGTGC TGACGCCGCA TCCGCTGGAA
GCCGCGCGAC TGCTGCATAC CGATGCGCTC GCCGTGCAGC ACGATCGGGT GTCCGCCGCC
AAGGCGCTTG TCAATCGGAC GGGCGCGGTG GTCGTGCTCA AAGGCTCGGG CACAGTCATC
GCGGCGCCTG GCATCCCGCC GGCCATCAAC CCAACCGGCA ACGGCGGGCT CGCCACCGGC
GGCACGGGCG ATGTACTGAC CGGCATGATC GGCGCACTGC TTGCGCAAGG CATGGGCGCG
CGTGAAGCTG CACTTGCGGC CGTCTGGCTG CATGGTCGTG CGGCCGATGA CCTTGTCCAC
GCGGGTGTGG GCCCCATCGG GCTGCACGCA AGCGAGCTTT GCGTACCGGC ACGGCGTGCG
CTCAACGCCT TGCTGGCGTC GGACGTTCGC CGATAG
 
Protein sequence
MSSHPSWREI LIDGALAAHH GADLLFGTAG IRALEAAAYR TLEPFTLMAR AGEAAADWLQ 
TRAPHGHVLL VAGPGNNGGD ALVAATVLHL AGRAVTVWLA ADPAKLPDDA RRAWTEACAA
NVPIEPLHTA VSVPAAASVI VDGLFGIGLA RPLTGLHAAL VDTINASGLP VFALDIPSGL
NGDTGQPPAP DSPVIQARAT ITFLAVKPGL LTGDGRDATG DIALADLQAA QAAYDGVIEA
DAFVNTPSRW LAHVPRRRHN GHKGTYGSAA IVGGAAGMVG APLLSARGAL YLGAGKVHVV
SLAADAPRID PAQPELMLHT WGALDLGGMQ ALAVGPGMGT GKESEAALEH LLDRMLSVRT
PAVFDADALN LFAKTPALLA RLTQLAGSGV PLVLTPHPLE AARLLHTDAL AVQHDRVSAA
KALVNRTGAV VVLKGSGTVI AAPGIPPAIN PTGNGGLATG GTGDVLTGMI GALLAQGMGA
REAALAAVWL HGRAADDLVH AGVGPIGLHA SELCVPARRA LNALLASDVR R