Gene Rpic_1826 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_1826 
Symbol 
ID6286125 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp1917862 
End bp1918719 
Gene Length858 bp 
Protein Length285 aa 
Translation table11 
GC content64% 
IMG OID642625388 
ProductIntegrase catalytic region 
Protein accessionYP_001899394 
Protein GI187928907 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.456922 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0211966 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTGCAGG TTGCCTCGTC GGCCTATCGG CGCCATGCCG CACGGCTGCG TGATCCGTCA 
CGGCGCAGCG ACCGTGCGCG TCGTGATGAA CGGCTCATGC CGCAAGTCCA GCGAGTGTGG
CAGGAGAACC ATCGCGTCTA CGGCGCCGAC AAGGTCTGGC GGCAACTGAA CCGCGAGGGC
GTGACGGTTG CCCGCTGCAC GGTCGAGCGA TTGATGCGCG CCCAGGGACT GCAAGGTGTG
CGGCGCGGCA AGCGGCTGCG AACGACCATC GCTGACGACG CCGCCAGTCG CCCGGTGGAT
CGCGTCAACC GGCAGTTCCG GGCCGACCGT CCCAATCAGC TCTGGGTCTC GGACTTCACC
TACGTCTCGA CATGGCAGGG TTGGCTGTAC GTGGCCTTCG TCGTCGACGT CTACGCCAGG
CGCATCGTCG GCTGGCGCGT GAGCAAATCC ATGACGACGG ACTTCGTGCT CGATGCGCTG
GAGCAGGCCC TATACGCTCG CCAGCCTGGC AACGACGGTT CTCTGACCCA CCACTCCGAT
AGGGGATCGC AGTACGTCAG CATCCGCTAT AGCGAACGCC TGGCCGAAGC CGGCATCGAG
CCGTCGGTCG GCAGCCGTGG CGACAGTTAC GACAACGCCT TGGCCGAGAC GATCAATGGC
TTGTACAAGG CCGAGCTGAT CCATCGCCGC GCGCCTTGGA AAACCAGGGA ATCCGTCGAA
CTGGCAACAC TGGAATGGGT CGCTTGGTTC AACCATAAGC GCCTGCACTC ATCCATCGGC
TATATCCCGC CCGCCGAGGC TGAGGCAAAC TACTACAACC AACTCGGCAA AACCGCCGAC
GAGGCCGTTT TACTTTAA
 
Protein sequence
MLQVASSAYR RHAARLRDPS RRSDRARRDE RLMPQVQRVW QENHRVYGAD KVWRQLNREG 
VTVARCTVER LMRAQGLQGV RRGKRLRTTI ADDAASRPVD RVNRQFRADR PNQLWVSDFT
YVSTWQGWLY VAFVVDVYAR RIVGWRVSKS MTTDFVLDAL EQALYARQPG NDGSLTHHSD
RGSQYVSIRY SERLAEAGIE PSVGSRGDSY DNALAETING LYKAELIHRR APWKTRESVE
LATLEWVAWF NHKRLHSSIG YIPPAEAEAN YYNQLGKTAD EAVLL